Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15615

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS15610 and CA265_RS15615 are separated by 110 nucleotidesCA265_RS15615 and CA265_RS15620 are separated by 257 nucleotides CA265_RS15610: CA265_RS15610 - bacillithiol biosynthesis cysteine-adding enzyme BshC, at 3,928,513 to 3,930,099 _RS15610 CA265_RS15615: CA265_RS15615 - malate dehydrogenase, at 3,930,210 to 3,931,295 _RS15615 CA265_RS15620: CA265_RS15620 - beta-1,3-glucosyltransferase, at 3,931,553 to 3,934,225 _RS15620 Position (kb) 3930 3931 3932Strain fitness (log2 ratio) -1 0 1 2at 3930.097 kb on + strandat 3930.100 kb on + strandat 3930.100 kb on + strandat 3930.166 kb on - strandat 3930.171 kb on + strandat 3930.171 kb on + strandat 3930.172 kb on - strandat 3930.175 kb on + strandat 3930.175 kb on + strandat 3930.176 kb on - strandat 3930.202 kb on + strandat 3930.207 kb on - strandat 3930.417 kb on - strand, within CA265_RS15615at 3930.455 kb on - strand, within CA265_RS15615at 3930.455 kb on - strand, within CA265_RS15615at 3930.484 kb on + strand, within CA265_RS15615at 3930.592 kb on + strand, within CA265_RS15615at 3930.624 kb on - strand, within CA265_RS15615at 3930.660 kb on + strand, within CA265_RS15615at 3930.731 kb on - strand, within CA265_RS15615at 3930.736 kb on + strand, within CA265_RS15615at 3930.915 kb on - strand, within CA265_RS15615at 3930.944 kb on + strand, within CA265_RS15615at 3930.945 kb on - strand, within CA265_RS15615at 3930.975 kb on + strand, within CA265_RS15615at 3930.976 kb on - strand, within CA265_RS15615at 3931.131 kb on - strand, within CA265_RS15615at 3931.131 kb on - strand, within CA265_RS15615at 3931.165 kb on + strand, within CA265_RS15615at 3931.293 kb on + strandat 3931.314 kb on + strandat 3931.315 kb on - strandat 3931.334 kb on - strandat 3931.334 kb on - strandat 3931.334 kb on - strandat 3931.347 kb on + strandat 3931.561 kb on + strandat 3931.580 kb on + strandat 3931.584 kb on + strandat 3931.585 kb on - strandat 3931.654 kb on + strandat 3931.670 kb on + strandat 3931.719 kb on - strandat 3931.849 kb on + strand, within CA265_RS15620at 3931.915 kb on - strand, within CA265_RS15620at 3931.915 kb on - strand, within CA265_RS15620at 3931.927 kb on - strand, within CA265_RS15620at 3931.963 kb on + strand, within CA265_RS15620at 3931.965 kb on + strand, within CA265_RS15620at 3932.072 kb on + strand, within CA265_RS15620at 3932.076 kb on - strand, within CA265_RS15620at 3932.159 kb on - strand, within CA265_RS15620at 3932.189 kb on + strand, within CA265_RS15620at 3932.226 kb on - strand, within CA265_RS15620at 3932.252 kb on + strand, within CA265_RS15620at 3932.285 kb on + strand, within CA265_RS15620

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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3,930,097 + +0.7
3,930,100 + -0.7
3,930,100 + +0.2
3,930,166 - +0.7
3,930,171 + -1.4
3,930,171 + +0.3
3,930,172 - +1.6
3,930,175 + +0.1
3,930,175 + -0.0
3,930,176 - +1.2
3,930,202 + -0.6
3,930,207 - +0.4
3,930,417 - CA265_RS15615 0.19 -0.4
3,930,455 - CA265_RS15615 0.23 +1.0
3,930,455 - CA265_RS15615 0.23 +0.7
3,930,484 + CA265_RS15615 0.25 +0.2
3,930,592 + CA265_RS15615 0.35 +0.7
3,930,624 - CA265_RS15615 0.38 +0.2
3,930,660 + CA265_RS15615 0.41 -0.2
3,930,731 - CA265_RS15615 0.48 +1.1
3,930,736 + CA265_RS15615 0.48 +1.1
3,930,915 - CA265_RS15615 0.65 +1.2
3,930,944 + CA265_RS15615 0.68 -1.1
3,930,945 - CA265_RS15615 0.68 -0.7
3,930,975 + CA265_RS15615 0.70 -0.6
3,930,976 - CA265_RS15615 0.71 +1.1
3,931,131 - CA265_RS15615 0.85 +0.8
3,931,131 - CA265_RS15615 0.85 +2.1
3,931,165 + CA265_RS15615 0.88 -0.4
3,931,293 + -0.2
3,931,314 + +1.2
3,931,315 - -0.8
3,931,334 - +0.6
3,931,334 - -0.2
3,931,334 - +0.6
3,931,347 + +0.3
3,931,561 + -0.1
3,931,580 + -1.4
3,931,584 + -1.1
3,931,585 - +0.0
3,931,654 + -0.1
3,931,670 + +0.2
3,931,719 - +0.6
3,931,849 + CA265_RS15620 0.11 +1.1
3,931,915 - CA265_RS15620 0.14 -0.0
3,931,915 - CA265_RS15620 0.14 -0.8
3,931,927 - CA265_RS15620 0.14 +0.8
3,931,963 + CA265_RS15620 0.15 -0.8
3,931,965 + CA265_RS15620 0.15 +1.2
3,932,072 + CA265_RS15620 0.19 +0.8
3,932,076 - CA265_RS15620 0.20 +1.1
3,932,159 - CA265_RS15620 0.23 +1.5
3,932,189 + CA265_RS15620 0.24 -0.0
3,932,226 - CA265_RS15620 0.25 +1.8
3,932,252 + CA265_RS15620 0.26 +0.3
3,932,285 + CA265_RS15620 0.27 -0.3

Or see this region's nucleotide sequence