Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS11605 and CA265_RS11610 are separated by 94 nucleotides CA265_RS11610 and CA265_RS11615 overlap by 1 nucleotides
CA265_RS11605: CA265_RS11605 - Proline dehydrogenase (EC 1.5.5.2) (from data) , at 2,878,659 to 2,879,843
_RS11605
CA265_RS11610: CA265_RS11610 - RNA-binding protein S4, at 2,879,938 to 2,880,144
_RS11610
CA265_RS11615: CA265_RS11615 - 3-dehydroquinate synthase, at 2,880,144 to 2,881,202
_RS11615
Position (kb)
2879
2880
2881 Strain fitness (log2 ratio)
-2
-1
0
1 at 2878.974 kb on - strand, within CA265_RS11605 at 2879.005 kb on + strand, within CA265_RS11605 at 2879.120 kb on + strand, within CA265_RS11605 at 2879.172 kb on - strand, within CA265_RS11605 at 2879.195 kb on + strand, within CA265_RS11605 at 2879.195 kb on + strand, within CA265_RS11605 at 2879.195 kb on + strand, within CA265_RS11605 at 2879.196 kb on - strand, within CA265_RS11605 at 2879.196 kb on - strand, within CA265_RS11605 at 2879.200 kb on + strand, within CA265_RS11605 at 2879.200 kb on + strand, within CA265_RS11605 at 2879.228 kb on + strand, within CA265_RS11605 at 2879.294 kb on + strand, within CA265_RS11605 at 2879.579 kb on + strand, within CA265_RS11605 at 2879.584 kb on - strand, within CA265_RS11605 at 2879.645 kb on + strand, within CA265_RS11605 at 2879.699 kb on + strand, within CA265_RS11605 at 2879.804 kb on + strand at 2879.853 kb on - strand at 2879.854 kb on + strand at 2879.858 kb on + strand at 2879.858 kb on + strand at 2879.879 kb on + strand at 2879.924 kb on + strand at 2880.087 kb on + strand, within CA265_RS11610 at 2880.093 kb on + strand, within CA265_RS11610
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,878,974 - CA265_RS11605 0.27 -0.1 2,879,005 + CA265_RS11605 0.29 -0.8 2,879,120 + CA265_RS11605 0.39 -0.3 2,879,172 - CA265_RS11605 0.43 +0.5 2,879,195 + CA265_RS11605 0.45 -0.1 2,879,195 + CA265_RS11605 0.45 -1.1 2,879,195 + CA265_RS11605 0.45 -0.9 2,879,196 - CA265_RS11605 0.45 +0.2 2,879,196 - CA265_RS11605 0.45 -1.5 2,879,200 + CA265_RS11605 0.46 +0.7 2,879,200 + CA265_RS11605 0.46 +0.1 2,879,228 + CA265_RS11605 0.48 -1.1 2,879,294 + CA265_RS11605 0.54 -0.3 2,879,579 + CA265_RS11605 0.78 +0.8 2,879,584 - CA265_RS11605 0.78 -0.1 2,879,645 + CA265_RS11605 0.83 +0.5 2,879,699 + CA265_RS11605 0.88 -1.1 2,879,804 + +1.4 2,879,853 - +0.6 2,879,854 + -0.9 2,879,858 + +0.4 2,879,858 + +0.8 2,879,879 + +0.1 2,879,924 + -2.1 2,880,087 + CA265_RS11610 0.72 +1.2 2,880,093 + CA265_RS11610 0.75 +0.7
Or see this region's nucleotide sequence