Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11610

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS11605 and CA265_RS11610 are separated by 94 nucleotidesCA265_RS11610 and CA265_RS11615 overlap by 1 nucleotides CA265_RS11605: CA265_RS11605 - Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,878,659 to 2,879,843 _RS11605 CA265_RS11610: CA265_RS11610 - RNA-binding protein S4, at 2,879,938 to 2,880,144 _RS11610 CA265_RS11615: CA265_RS11615 - 3-dehydroquinate synthase, at 2,880,144 to 2,881,202 _RS11615 Position (kb) 2879 2880 2881Strain fitness (log2 ratio) -2 -1 0 1at 2878.974 kb on - strand, within CA265_RS11605at 2879.005 kb on + strand, within CA265_RS11605at 2879.120 kb on + strand, within CA265_RS11605at 2879.172 kb on - strand, within CA265_RS11605at 2879.195 kb on + strand, within CA265_RS11605at 2879.195 kb on + strand, within CA265_RS11605at 2879.195 kb on + strand, within CA265_RS11605at 2879.196 kb on - strand, within CA265_RS11605at 2879.196 kb on - strand, within CA265_RS11605at 2879.200 kb on + strand, within CA265_RS11605at 2879.200 kb on + strand, within CA265_RS11605at 2879.228 kb on + strand, within CA265_RS11605at 2879.294 kb on + strand, within CA265_RS11605at 2879.579 kb on + strand, within CA265_RS11605at 2879.584 kb on - strand, within CA265_RS11605at 2879.645 kb on + strand, within CA265_RS11605at 2879.699 kb on + strand, within CA265_RS11605at 2879.804 kb on + strandat 2879.853 kb on - strandat 2879.854 kb on + strandat 2879.858 kb on + strandat 2879.858 kb on + strandat 2879.879 kb on + strandat 2879.924 kb on + strandat 2880.087 kb on + strand, within CA265_RS11610at 2880.093 kb on + strand, within CA265_RS11610

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,878,974 - CA265_RS11605 0.27 -0.1
2,879,005 + CA265_RS11605 0.29 -0.8
2,879,120 + CA265_RS11605 0.39 -0.3
2,879,172 - CA265_RS11605 0.43 +0.5
2,879,195 + CA265_RS11605 0.45 -0.1
2,879,195 + CA265_RS11605 0.45 -1.1
2,879,195 + CA265_RS11605 0.45 -0.9
2,879,196 - CA265_RS11605 0.45 +0.2
2,879,196 - CA265_RS11605 0.45 -1.5
2,879,200 + CA265_RS11605 0.46 +0.7
2,879,200 + CA265_RS11605 0.46 +0.1
2,879,228 + CA265_RS11605 0.48 -1.1
2,879,294 + CA265_RS11605 0.54 -0.3
2,879,579 + CA265_RS11605 0.78 +0.8
2,879,584 - CA265_RS11605 0.78 -0.1
2,879,645 + CA265_RS11605 0.83 +0.5
2,879,699 + CA265_RS11605 0.88 -1.1
2,879,804 + +1.4
2,879,853 - +0.6
2,879,854 + -0.9
2,879,858 + +0.4
2,879,858 + +0.8
2,879,879 + +0.1
2,879,924 + -2.1
2,880,087 + CA265_RS11610 0.72 +1.2
2,880,093 + CA265_RS11610 0.75 +0.7

Or see this region's nucleotide sequence