Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS10210 and CA265_RS10215 are separated by 109 nucleotides CA265_RS10215 and CA265_RS10220 overlap by 1 nucleotides
CA265_RS10210: CA265_RS10210 - alpha-L-fucosidase, at 2,509,229 to 2,510,731
_RS10210
CA265_RS10215: CA265_RS10215 - beta-hexosaminidase, at 2,510,841 to 2,512,430
_RS10215
CA265_RS10220: CA265_RS10220 - hypothetical protein, at 2,512,430 to 2,513,818
_RS10220
Position (kb)
2510
2511
2512
2513 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2509.871 kb on - strand, within CA265_RS10210 at 2509.931 kb on - strand, within CA265_RS10210 at 2509.935 kb on - strand, within CA265_RS10210 at 2509.967 kb on + strand, within CA265_RS10210 at 2509.986 kb on + strand, within CA265_RS10210 at 2510.083 kb on - strand, within CA265_RS10210 at 2510.135 kb on - strand, within CA265_RS10210 at 2510.142 kb on + strand, within CA265_RS10210 at 2510.143 kb on - strand, within CA265_RS10210 at 2510.153 kb on - strand, within CA265_RS10210 at 2510.163 kb on - strand, within CA265_RS10210 at 2510.176 kb on - strand, within CA265_RS10210 at 2510.181 kb on + strand, within CA265_RS10210 at 2510.181 kb on + strand, within CA265_RS10210 at 2510.182 kb on - strand, within CA265_RS10210 at 2510.183 kb on + strand, within CA265_RS10210 at 2510.184 kb on - strand, within CA265_RS10210 at 2510.184 kb on - strand, within CA265_RS10210 at 2510.203 kb on + strand, within CA265_RS10210 at 2510.205 kb on + strand, within CA265_RS10210 at 2510.213 kb on + strand, within CA265_RS10210 at 2510.271 kb on + strand, within CA265_RS10210 at 2510.381 kb on - strand, within CA265_RS10210 at 2510.386 kb on + strand at 2510.409 kb on + strand, within CA265_RS10210 at 2510.556 kb on + strand, within CA265_RS10210 at 2510.575 kb on + strand, within CA265_RS10210 at 2510.575 kb on + strand, within CA265_RS10210 at 2510.688 kb on - strand at 2510.702 kb on - strand at 2510.723 kb on - strand at 2510.737 kb on + strand at 2510.774 kb on + strand at 2510.783 kb on + strand at 2510.784 kb on - strand at 2510.856 kb on + strand at 2510.914 kb on + strand at 2510.914 kb on + strand at 2510.917 kb on + strand at 2510.959 kb on - strand at 2510.959 kb on - strand at 2511.065 kb on + strand, within CA265_RS10215 at 2511.065 kb on + strand, within CA265_RS10215 at 2511.102 kb on + strand, within CA265_RS10215 at 2511.103 kb on - strand, within CA265_RS10215 at 2511.178 kb on + strand, within CA265_RS10215 at 2511.178 kb on + strand, within CA265_RS10215 at 2511.202 kb on + strand, within CA265_RS10215 at 2511.236 kb on - strand, within CA265_RS10215 at 2511.255 kb on + strand, within CA265_RS10215 at 2511.275 kb on + strand, within CA265_RS10215 at 2511.288 kb on - strand, within CA265_RS10215 at 2511.397 kb on + strand, within CA265_RS10215 at 2511.414 kb on - strand, within CA265_RS10215 at 2511.592 kb on + strand, within CA265_RS10215 at 2511.689 kb on + strand, within CA265_RS10215 at 2511.690 kb on - strand, within CA265_RS10215 at 2511.730 kb on + strand, within CA265_RS10215 at 2511.730 kb on + strand, within CA265_RS10215 at 2511.745 kb on + strand, within CA265_RS10215 at 2511.798 kb on - strand, within CA265_RS10215 at 2511.835 kb on - strand at 2511.835 kb on - strand, within CA265_RS10215 at 2511.904 kb on - strand, within CA265_RS10215 at 2511.904 kb on - strand, within CA265_RS10215 at 2511.939 kb on + strand, within CA265_RS10215 at 2511.998 kb on - strand, within CA265_RS10215 at 2512.075 kb on - strand, within CA265_RS10215 at 2512.144 kb on + strand, within CA265_RS10215 at 2512.242 kb on + strand, within CA265_RS10215 at 2512.242 kb on + strand, within CA265_RS10215 at 2512.311 kb on - strand at 2512.394 kb on - strand at 2512.410 kb on + strand at 2512.411 kb on - strand at 2512.419 kb on + strand at 2512.451 kb on + strand at 2512.517 kb on - strand at 2512.517 kb on - strand at 2512.541 kb on - strand at 2512.604 kb on + strand, within CA265_RS10220 at 2512.605 kb on - strand, within CA265_RS10220 at 2512.661 kb on - strand, within CA265_RS10220 at 2512.665 kb on + strand, within CA265_RS10220 at 2512.744 kb on + strand, within CA265_RS10220 at 2512.744 kb on + strand, within CA265_RS10220 at 2512.745 kb on - strand, within CA265_RS10220 at 2512.745 kb on - strand, within CA265_RS10220 at 2512.747 kb on + strand, within CA265_RS10220 at 2512.801 kb on - strand, within CA265_RS10220 at 2512.801 kb on - strand, within CA265_RS10220 at 2512.873 kb on + strand, within CA265_RS10220 at 2512.873 kb on + strand, within CA265_RS10220 at 2512.874 kb on - strand, within CA265_RS10220 at 2512.926 kb on - strand, within CA265_RS10220 at 2512.981 kb on + strand, within CA265_RS10220 at 2513.209 kb on + strand, within CA265_RS10220 at 2513.269 kb on + strand, within CA265_RS10220 at 2513.270 kb on - strand, within CA265_RS10220 at 2513.296 kb on + strand, within CA265_RS10220 at 2513.316 kb on - strand, within CA265_RS10220 at 2513.371 kb on - strand, within CA265_RS10220
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,509,871 - CA265_RS10210 0.43 +0.1 2,509,931 - CA265_RS10210 0.47 -0.1 2,509,935 - CA265_RS10210 0.47 +1.1 2,509,967 + CA265_RS10210 0.49 -3.4 2,509,986 + CA265_RS10210 0.50 +1.2 2,510,083 - CA265_RS10210 0.57 -1.1 2,510,135 - CA265_RS10210 0.60 -0.4 2,510,142 + CA265_RS10210 0.61 -0.5 2,510,143 - CA265_RS10210 0.61 +0.3 2,510,153 - CA265_RS10210 0.61 -0.7 2,510,163 - CA265_RS10210 0.62 -0.9 2,510,176 - CA265_RS10210 0.63 -0.6 2,510,181 + CA265_RS10210 0.63 -1.0 2,510,181 + CA265_RS10210 0.63 -0.5 2,510,182 - CA265_RS10210 0.63 -0.7 2,510,183 + CA265_RS10210 0.63 -0.1 2,510,184 - CA265_RS10210 0.64 -1.0 2,510,184 - CA265_RS10210 0.64 +0.1 2,510,203 + CA265_RS10210 0.65 +0.5 2,510,205 + CA265_RS10210 0.65 +1.9 2,510,213 + CA265_RS10210 0.65 -0.1 2,510,271 + CA265_RS10210 0.69 +0.8 2,510,381 - CA265_RS10210 0.77 +0.1 2,510,386 + +3.4 2,510,409 + CA265_RS10210 0.79 -1.3 2,510,556 + CA265_RS10210 0.88 -0.0 2,510,575 + CA265_RS10210 0.90 -0.8 2,510,575 + CA265_RS10210 0.90 -0.2 2,510,688 - +0.6 2,510,702 - +0.0 2,510,723 - -0.0 2,510,737 + -1.7 2,510,774 + -0.9 2,510,783 + +1.2 2,510,784 - -0.8 2,510,856 + -0.3 2,510,914 + +0.5 2,510,914 + +0.2 2,510,917 + +0.8 2,510,959 - +0.4 2,510,959 - +0.1 2,511,065 + CA265_RS10215 0.14 -0.3 2,511,065 + CA265_RS10215 0.14 +0.6 2,511,102 + CA265_RS10215 0.16 +0.1 2,511,103 - CA265_RS10215 0.16 -0.1 2,511,178 + CA265_RS10215 0.21 -0.4 2,511,178 + CA265_RS10215 0.21 +0.1 2,511,202 + CA265_RS10215 0.23 -0.4 2,511,236 - CA265_RS10215 0.25 -1.2 2,511,255 + CA265_RS10215 0.26 -0.1 2,511,275 + CA265_RS10215 0.27 -0.3 2,511,288 - CA265_RS10215 0.28 +0.2 2,511,397 + CA265_RS10215 0.35 +0.5 2,511,414 - CA265_RS10215 0.36 -1.1 2,511,592 + CA265_RS10215 0.47 +0.6 2,511,689 + CA265_RS10215 0.53 -0.9 2,511,690 - CA265_RS10215 0.53 -0.3 2,511,730 + CA265_RS10215 0.56 -0.4 2,511,730 + CA265_RS10215 0.56 -0.1 2,511,745 + CA265_RS10215 0.57 -0.2 2,511,798 - CA265_RS10215 0.60 +0.5 2,511,835 - -0.8 2,511,835 - CA265_RS10215 0.63 -1.8 2,511,904 - CA265_RS10215 0.67 -0.6 2,511,904 - CA265_RS10215 0.67 -0.1 2,511,939 + CA265_RS10215 0.69 -0.2 2,511,998 - CA265_RS10215 0.73 -0.1 2,512,075 - CA265_RS10215 0.78 -0.4 2,512,144 + CA265_RS10215 0.82 +0.6 2,512,242 + CA265_RS10215 0.88 -1.2 2,512,242 + CA265_RS10215 0.88 -0.0 2,512,311 - +0.4 2,512,394 - +1.2 2,512,410 + +0.0 2,512,411 - +0.7 2,512,419 + +0.7 2,512,451 + +0.1 2,512,517 - +0.3 2,512,517 - -1.3 2,512,541 - -0.1 2,512,604 + CA265_RS10220 0.13 +0.6 2,512,605 - CA265_RS10220 0.13 -0.4 2,512,661 - CA265_RS10220 0.17 -0.9 2,512,665 + CA265_RS10220 0.17 -1.5 2,512,744 + CA265_RS10220 0.23 +0.0 2,512,744 + CA265_RS10220 0.23 +0.2 2,512,745 - CA265_RS10220 0.23 -0.6 2,512,745 - CA265_RS10220 0.23 +0.8 2,512,747 + CA265_RS10220 0.23 +0.1 2,512,801 - CA265_RS10220 0.27 -0.5 2,512,801 - CA265_RS10220 0.27 -1.6 2,512,873 + CA265_RS10220 0.32 -0.1 2,512,873 + CA265_RS10220 0.32 -0.1 2,512,874 - CA265_RS10220 0.32 -0.4 2,512,926 - CA265_RS10220 0.36 +0.2 2,512,981 + CA265_RS10220 0.40 +0.5 2,513,209 + CA265_RS10220 0.56 +0.6 2,513,269 + CA265_RS10220 0.60 -0.6 2,513,270 - CA265_RS10220 0.60 -2.1 2,513,296 + CA265_RS10220 0.62 -0.8 2,513,316 - CA265_RS10220 0.64 -0.1 2,513,371 - CA265_RS10220 0.68 -0.5
Or see this region's nucleotide sequence