Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10215

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS10210 and CA265_RS10215 are separated by 109 nucleotidesCA265_RS10215 and CA265_RS10220 overlap by 1 nucleotides CA265_RS10210: CA265_RS10210 - alpha-L-fucosidase, at 2,509,229 to 2,510,731 _RS10210 CA265_RS10215: CA265_RS10215 - beta-hexosaminidase, at 2,510,841 to 2,512,430 _RS10215 CA265_RS10220: CA265_RS10220 - hypothetical protein, at 2,512,430 to 2,513,818 _RS10220 Position (kb) 2510 2511 2512 2513Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2509.871 kb on - strand, within CA265_RS10210at 2509.931 kb on - strand, within CA265_RS10210at 2509.935 kb on - strand, within CA265_RS10210at 2509.967 kb on + strand, within CA265_RS10210at 2509.986 kb on + strand, within CA265_RS10210at 2510.083 kb on - strand, within CA265_RS10210at 2510.135 kb on - strand, within CA265_RS10210at 2510.142 kb on + strand, within CA265_RS10210at 2510.143 kb on - strand, within CA265_RS10210at 2510.153 kb on - strand, within CA265_RS10210at 2510.163 kb on - strand, within CA265_RS10210at 2510.176 kb on - strand, within CA265_RS10210at 2510.181 kb on + strand, within CA265_RS10210at 2510.181 kb on + strand, within CA265_RS10210at 2510.182 kb on - strand, within CA265_RS10210at 2510.183 kb on + strand, within CA265_RS10210at 2510.184 kb on - strand, within CA265_RS10210at 2510.184 kb on - strand, within CA265_RS10210at 2510.203 kb on + strand, within CA265_RS10210at 2510.205 kb on + strand, within CA265_RS10210at 2510.213 kb on + strand, within CA265_RS10210at 2510.271 kb on + strand, within CA265_RS10210at 2510.381 kb on - strand, within CA265_RS10210at 2510.386 kb on + strandat 2510.409 kb on + strand, within CA265_RS10210at 2510.556 kb on + strand, within CA265_RS10210at 2510.575 kb on + strand, within CA265_RS10210at 2510.575 kb on + strand, within CA265_RS10210at 2510.688 kb on - strandat 2510.702 kb on - strandat 2510.723 kb on - strandat 2510.737 kb on + strandat 2510.774 kb on + strandat 2510.783 kb on + strandat 2510.784 kb on - strandat 2510.856 kb on + strandat 2510.914 kb on + strandat 2510.914 kb on + strandat 2510.917 kb on + strandat 2510.959 kb on - strandat 2510.959 kb on - strandat 2511.065 kb on + strand, within CA265_RS10215at 2511.065 kb on + strand, within CA265_RS10215at 2511.102 kb on + strand, within CA265_RS10215at 2511.103 kb on - strand, within CA265_RS10215at 2511.178 kb on + strand, within CA265_RS10215at 2511.178 kb on + strand, within CA265_RS10215at 2511.202 kb on + strand, within CA265_RS10215at 2511.236 kb on - strand, within CA265_RS10215at 2511.255 kb on + strand, within CA265_RS10215at 2511.275 kb on + strand, within CA265_RS10215at 2511.288 kb on - strand, within CA265_RS10215at 2511.397 kb on + strand, within CA265_RS10215at 2511.414 kb on - strand, within CA265_RS10215at 2511.592 kb on + strand, within CA265_RS10215at 2511.689 kb on + strand, within CA265_RS10215at 2511.690 kb on - strand, within CA265_RS10215at 2511.730 kb on + strand, within CA265_RS10215at 2511.730 kb on + strand, within CA265_RS10215at 2511.745 kb on + strand, within CA265_RS10215at 2511.798 kb on - strand, within CA265_RS10215at 2511.835 kb on - strandat 2511.835 kb on - strand, within CA265_RS10215at 2511.904 kb on - strand, within CA265_RS10215at 2511.904 kb on - strand, within CA265_RS10215at 2511.939 kb on + strand, within CA265_RS10215at 2511.998 kb on - strand, within CA265_RS10215at 2512.075 kb on - strand, within CA265_RS10215at 2512.144 kb on + strand, within CA265_RS10215at 2512.242 kb on + strand, within CA265_RS10215at 2512.242 kb on + strand, within CA265_RS10215at 2512.311 kb on - strandat 2512.394 kb on - strandat 2512.410 kb on + strandat 2512.411 kb on - strandat 2512.419 kb on + strandat 2512.451 kb on + strandat 2512.517 kb on - strandat 2512.517 kb on - strandat 2512.541 kb on - strandat 2512.604 kb on + strand, within CA265_RS10220at 2512.605 kb on - strand, within CA265_RS10220at 2512.661 kb on - strand, within CA265_RS10220at 2512.665 kb on + strand, within CA265_RS10220at 2512.744 kb on + strand, within CA265_RS10220at 2512.744 kb on + strand, within CA265_RS10220at 2512.745 kb on - strand, within CA265_RS10220at 2512.745 kb on - strand, within CA265_RS10220at 2512.747 kb on + strand, within CA265_RS10220at 2512.801 kb on - strand, within CA265_RS10220at 2512.801 kb on - strand, within CA265_RS10220at 2512.873 kb on + strand, within CA265_RS10220at 2512.873 kb on + strand, within CA265_RS10220at 2512.874 kb on - strand, within CA265_RS10220at 2512.926 kb on - strand, within CA265_RS10220at 2512.981 kb on + strand, within CA265_RS10220at 2513.209 kb on + strand, within CA265_RS10220at 2513.269 kb on + strand, within CA265_RS10220at 2513.270 kb on - strand, within CA265_RS10220at 2513.296 kb on + strand, within CA265_RS10220at 2513.316 kb on - strand, within CA265_RS10220at 2513.371 kb on - strand, within CA265_RS10220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
2,509,871 - CA265_RS10210 0.43 +0.1
2,509,931 - CA265_RS10210 0.47 -0.1
2,509,935 - CA265_RS10210 0.47 +1.1
2,509,967 + CA265_RS10210 0.49 -3.4
2,509,986 + CA265_RS10210 0.50 +1.2
2,510,083 - CA265_RS10210 0.57 -1.1
2,510,135 - CA265_RS10210 0.60 -0.4
2,510,142 + CA265_RS10210 0.61 -0.5
2,510,143 - CA265_RS10210 0.61 +0.3
2,510,153 - CA265_RS10210 0.61 -0.7
2,510,163 - CA265_RS10210 0.62 -0.9
2,510,176 - CA265_RS10210 0.63 -0.6
2,510,181 + CA265_RS10210 0.63 -1.0
2,510,181 + CA265_RS10210 0.63 -0.5
2,510,182 - CA265_RS10210 0.63 -0.7
2,510,183 + CA265_RS10210 0.63 -0.1
2,510,184 - CA265_RS10210 0.64 -1.0
2,510,184 - CA265_RS10210 0.64 +0.1
2,510,203 + CA265_RS10210 0.65 +0.5
2,510,205 + CA265_RS10210 0.65 +1.9
2,510,213 + CA265_RS10210 0.65 -0.1
2,510,271 + CA265_RS10210 0.69 +0.8
2,510,381 - CA265_RS10210 0.77 +0.1
2,510,386 + +3.4
2,510,409 + CA265_RS10210 0.79 -1.3
2,510,556 + CA265_RS10210 0.88 -0.0
2,510,575 + CA265_RS10210 0.90 -0.8
2,510,575 + CA265_RS10210 0.90 -0.2
2,510,688 - +0.6
2,510,702 - +0.0
2,510,723 - -0.0
2,510,737 + -1.7
2,510,774 + -0.9
2,510,783 + +1.2
2,510,784 - -0.8
2,510,856 + -0.3
2,510,914 + +0.5
2,510,914 + +0.2
2,510,917 + +0.8
2,510,959 - +0.4
2,510,959 - +0.1
2,511,065 + CA265_RS10215 0.14 -0.3
2,511,065 + CA265_RS10215 0.14 +0.6
2,511,102 + CA265_RS10215 0.16 +0.1
2,511,103 - CA265_RS10215 0.16 -0.1
2,511,178 + CA265_RS10215 0.21 -0.4
2,511,178 + CA265_RS10215 0.21 +0.1
2,511,202 + CA265_RS10215 0.23 -0.4
2,511,236 - CA265_RS10215 0.25 -1.2
2,511,255 + CA265_RS10215 0.26 -0.1
2,511,275 + CA265_RS10215 0.27 -0.3
2,511,288 - CA265_RS10215 0.28 +0.2
2,511,397 + CA265_RS10215 0.35 +0.5
2,511,414 - CA265_RS10215 0.36 -1.1
2,511,592 + CA265_RS10215 0.47 +0.6
2,511,689 + CA265_RS10215 0.53 -0.9
2,511,690 - CA265_RS10215 0.53 -0.3
2,511,730 + CA265_RS10215 0.56 -0.4
2,511,730 + CA265_RS10215 0.56 -0.1
2,511,745 + CA265_RS10215 0.57 -0.2
2,511,798 - CA265_RS10215 0.60 +0.5
2,511,835 - -0.8
2,511,835 - CA265_RS10215 0.63 -1.8
2,511,904 - CA265_RS10215 0.67 -0.6
2,511,904 - CA265_RS10215 0.67 -0.1
2,511,939 + CA265_RS10215 0.69 -0.2
2,511,998 - CA265_RS10215 0.73 -0.1
2,512,075 - CA265_RS10215 0.78 -0.4
2,512,144 + CA265_RS10215 0.82 +0.6
2,512,242 + CA265_RS10215 0.88 -1.2
2,512,242 + CA265_RS10215 0.88 -0.0
2,512,311 - +0.4
2,512,394 - +1.2
2,512,410 + +0.0
2,512,411 - +0.7
2,512,419 + +0.7
2,512,451 + +0.1
2,512,517 - +0.3
2,512,517 - -1.3
2,512,541 - -0.1
2,512,604 + CA265_RS10220 0.13 +0.6
2,512,605 - CA265_RS10220 0.13 -0.4
2,512,661 - CA265_RS10220 0.17 -0.9
2,512,665 + CA265_RS10220 0.17 -1.5
2,512,744 + CA265_RS10220 0.23 +0.0
2,512,744 + CA265_RS10220 0.23 +0.2
2,512,745 - CA265_RS10220 0.23 -0.6
2,512,745 - CA265_RS10220 0.23 +0.8
2,512,747 + CA265_RS10220 0.23 +0.1
2,512,801 - CA265_RS10220 0.27 -0.5
2,512,801 - CA265_RS10220 0.27 -1.6
2,512,873 + CA265_RS10220 0.32 -0.1
2,512,873 + CA265_RS10220 0.32 -0.1
2,512,874 - CA265_RS10220 0.32 -0.4
2,512,926 - CA265_RS10220 0.36 +0.2
2,512,981 + CA265_RS10220 0.40 +0.5
2,513,209 + CA265_RS10220 0.56 +0.6
2,513,269 + CA265_RS10220 0.60 -0.6
2,513,270 - CA265_RS10220 0.60 -2.1
2,513,296 + CA265_RS10220 0.62 -0.8
2,513,316 - CA265_RS10220 0.64 -0.1
2,513,371 - CA265_RS10220 0.68 -0.5

Or see this region's nucleotide sequence