Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08540

Experiment: D-Mannose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose (C)
2,137,223	+		CA265_RS08535	0.26	+1.5
2,137,223	+		CA265_RS08535	0.26	+1.5
2,137,278	+		CA265_RS08535	0.31	+1.2
2,137,278	+		CA265_RS08535	0.31	+1.5
2,137,279	-		CA265_RS08535	0.31	-1.1
2,137,281	-		CA265_RS08535	0.31	+0.5
2,137,321	+		CA265_RS08535	0.35	+1.7
2,137,322	-		CA265_RS08535	0.35	+0.6
2,137,322	-		CA265_RS08535	0.35	+0.2
2,137,337	+		CA265_RS08535	0.36	+1.1
2,137,338	-		CA265_RS08535	0.36	-0.7
2,137,354	-		CA265_RS08535	0.38	+0.3
2,137,385	-		CA265_RS08535	0.41	+0.6
2,137,410	+		CA265_RS08535	0.43	+0.9
2,137,413	-		CA265_RS08535	0.43	+0.8
2,137,413	-		CA265_RS08535	0.43	-0.7
2,137,433	-		CA265_RS08535	0.45	+0.3
2,137,469	-		CA265_RS08535	0.48	-0.1
2,137,489	+		CA265_RS08535	0.50	+1.9
2,137,490	-		CA265_RS08535	0.50	-0.4
2,137,490	-				+0.1
2,137,532	-		CA265_RS08535	0.54	+2.1
2,137,575	+		CA265_RS08535	0.58	+1.4
2,137,578	+		CA265_RS08535	0.58	+1.9
2,137,579	-		CA265_RS08535	0.58	+0.3
2,137,580	+		CA265_RS08535	0.58	+2.1
2,137,627	-		CA265_RS08535	0.62	+0.5
2,137,658	+		CA265_RS08535	0.65	+2.1
2,137,658	+		CA265_RS08535	0.65	+1.6
2,137,757	-		CA265_RS08535	0.74	-0.2
2,137,813	+		CA265_RS08535	0.79	+1.9
2,137,891	+		CA265_RS08535	0.86	+0.9
2,137,902	-		CA265_RS08535	0.87	-0.8
2,137,921	-		CA265_RS08535	0.89	+0.1
2,137,922	+		CA265_RS08535	0.89	+2.2
2,137,958	+				+2.0
2,138,018	-				+2.0
2,138,043	+				+0.8
2,138,054	+				-0.4
2,138,189	+				+0.4
2,138,244	+				+0.3
2,138,305	+				+0.2
2,138,305	+				-0.2
2,138,305	+				+2.3
2,138,314	-				-0.8
2,138,314	-				-0.0
2,138,316	+				+0.5
2,138,418	-				-0.1
2,138,463	+		CA265_RS08540	0.10	+0.6
2,138,469	-		CA265_RS08540	0.11	-0.1
2,138,492	+		CA265_RS08540	0.12	+0.8
2,138,497	-		CA265_RS08540	0.12	-0.6
2,138,527	+		CA265_RS08540	0.13	+0.3
2,138,551	+		CA265_RS08540	0.14	+0.6
2,138,605	-		CA265_RS08540	0.16	-0.1
2,138,605	-		CA265_RS08540	0.16	-0.4
2,138,651	-		CA265_RS08540	0.18	+0.4
2,138,679	-		CA265_RS08540	0.19	+0.6
2,138,737	-		CA265_RS08540	0.22	-1.1
2,138,739	+		CA265_RS08540	0.22	+1.8
2,138,741	+		CA265_RS08540	0.22	+0.7
2,138,799	+		CA265_RS08540	0.24	+0.9
2,138,800	-		CA265_RS08540	0.24	+0.2
2,138,854	-		CA265_RS08540	0.27	-0.2
2,138,857	+		CA265_RS08540	0.27	+0.9
2,139,062	-		CA265_RS08540	0.35	-0.5
2,139,063	+		CA265_RS08540	0.35	+0.6
2,139,120	-		CA265_RS08540	0.38	-1.3
2,139,194	+		CA265_RS08540	0.41	+1.8
2,139,194	+		CA265_RS08540	0.41	+1.2
2,139,194	+		CA265_RS08540	0.41	+1.0
2,139,195	-		CA265_RS08540	0.41	-0.4
2,139,240	-		CA265_RS08540	0.43	-1.3
2,139,261	+				+2.3
2,139,290	+		CA265_RS08540	0.45	-0.3
2,139,298	-		CA265_RS08540	0.45	-1.3
2,139,315	-		CA265_RS08540	0.46	+0.5
2,139,441	+		CA265_RS08540	0.51	+1.5
2,139,441	+		CA265_RS08540	0.51	+0.7
2,139,441	+		CA265_RS08540	0.51	+0.9
2,139,486	+		CA265_RS08540	0.53	+0.7
2,139,486	+		CA265_RS08540	0.53	+0.4
2,139,487	-		CA265_RS08540	0.53	-0.2
2,139,487	-		CA265_RS08540	0.53	+0.1
2,139,620	-		CA265_RS08540	0.58	-0.0
2,139,628	-		CA265_RS08540	0.59	+0.3
2,139,700	-		CA265_RS08540	0.62	-0.7
2,139,780	+		CA265_RS08540	0.65	+2.0
2,139,790	-		CA265_RS08540	0.66	+0.0
2,139,814	+		CA265_RS08540	0.67	+1.7
2,139,935	+		CA265_RS08540	0.72	+0.6
2,139,935	+		CA265_RS08540	0.72	+1.2
2,139,935	+		CA265_RS08540	0.72	+1.1
2,139,935	+		CA265_RS08540	0.72	+1.9
2,140,009	+		CA265_RS08540	0.75	+1.1
2,140,010	-		CA265_RS08540	0.75	-0.3
2,140,015	+		CA265_RS08540	0.75	+1.6
2,140,015	+		CA265_RS08540	0.75	+1.5
2,140,016	-		CA265_RS08540	0.75	+1.1
2,140,016	-		CA265_RS08540	0.75	+0.2
2,140,095	-		CA265_RS08540	0.78	+0.0
2,140,105	+		CA265_RS08540	0.79	+2.2
2,140,106	-		CA265_RS08540	0.79	-0.2
2,140,106	-		CA265_RS08540	0.79	-0.1
2,140,125	-		CA265_RS08540	0.79	-0.3
2,140,125	-		CA265_RS08540	0.79	+0.0
2,140,155	+		CA265_RS08540	0.81	+1.8
2,140,181	+		CA265_RS08540	0.82	+2.2
2,140,181	+		CA265_RS08540	0.82	+1.6
2,140,181	+		CA265_RS08540	0.82	+1.1
2,140,182	-		CA265_RS08540	0.82	+0.3
2,140,182	-		CA265_RS08540	0.82	-0.6
2,140,368	-		CA265_RS08540	0.89	+0.2
2,140,386	-				+0.1
2,140,421	+				+2.2
2,140,422	-				-0.3
2,140,437	+				+2.1
2,140,438	-				+0.9
2,140,471	-				-0.1
2,140,514	+				+2.2
2,140,514	+				+1.7
2,140,563	-				+0.0
2,140,606	-				+0.1
2,140,672	+				+3.3
2,140,698	-				+0.5
2,140,772	+				+1.2
2,140,772	+				+0.2
2,140,790	+				+0.8
2,140,791	-				+0.2
2,140,887	-				+1.1
2,141,025	+		CA265_RS08545	0.21	+0.3
2,141,025	+		CA265_RS08545	0.21	+1.3
2,141,026	-		CA265_RS08545	0.22	+0.6
2,141,044	+		CA265_RS08545	0.23	+0.7
2,141,044	+		CA265_RS08545	0.23	+0.4
2,141,181	+		CA265_RS08545	0.35	+1.2
2,141,260	+		CA265_RS08545	0.42	+1.1
2,141,260	+		CA265_RS08545	0.42	+0.4
2,141,261	-		CA265_RS08545	0.42	+0.7
2,141,261	-		CA265_RS08545	0.42	-0.1
2,141,261	-		CA265_RS08545	0.42	+0.3
2,141,261	-		CA265_RS08545	0.42	-0.8
2,141,425	-		CA265_RS08545	0.56	+0.9
2,141,425	-		CA265_RS08545	0.56	-0.7
2,141,440	+		CA265_RS08545	0.57	+1.7
2,141,440	+		CA265_RS08545	0.57	+0.9
2,141,440	+		CA265_RS08545	0.57	+1.5
2,141,440	+		CA265_RS08545	0.57	+2.2
2,141,453	-		CA265_RS08545	0.58	-0.2
2,141,458	-		CA265_RS08545	0.59	-0.3
2,141,543	-		CA265_RS08545	0.66	-0.7