Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06585

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS06580 and CA265_RS06585 are separated by 100 nucleotidesCA265_RS06585 and CA265_RS06590 are separated by 36 nucleotides CA265_RS06580: CA265_RS06580 - MFS transporter, at 1,627,087 to 1,628,748 _RS06580 CA265_RS06585: CA265_RS06585 - hypothetical protein, at 1,628,849 to 1,629,745 _RS06585 CA265_RS06590: CA265_RS06590 - acetyl-CoA acetyltransferase, at 1,629,782 to 1,630,957 _RS06590 Position (kb) 1628 1629 1630Strain fitness (log2 ratio) -1 0 1 2 3at 1627.891 kb on + strand, within CA265_RS06580at 1627.891 kb on + strand, within CA265_RS06580at 1627.898 kb on - strand, within CA265_RS06580at 1627.902 kb on + strand, within CA265_RS06580at 1627.902 kb on + strand, within CA265_RS06580at 1627.917 kb on + strand, within CA265_RS06580at 1627.962 kb on - strand, within CA265_RS06580at 1627.991 kb on - strand, within CA265_RS06580at 1627.993 kb on - strand, within CA265_RS06580at 1628.130 kb on + strand, within CA265_RS06580at 1628.130 kb on + strand, within CA265_RS06580at 1628.131 kb on - strand, within CA265_RS06580at 1628.134 kb on - strand, within CA265_RS06580at 1628.160 kb on - strand, within CA265_RS06580at 1628.177 kb on - strand, within CA265_RS06580at 1628.183 kb on - strand, within CA265_RS06580at 1628.203 kb on - strand, within CA265_RS06580at 1628.203 kb on - strand, within CA265_RS06580at 1628.207 kb on - strand, within CA265_RS06580at 1628.207 kb on - strand, within CA265_RS06580at 1628.207 kb on - strand, within CA265_RS06580at 1628.248 kb on - strand, within CA265_RS06580at 1628.251 kb on + strand, within CA265_RS06580at 1628.311 kb on - strand, within CA265_RS06580at 1628.339 kb on + strand, within CA265_RS06580at 1628.340 kb on - strand, within CA265_RS06580at 1628.369 kb on - strand, within CA265_RS06580at 1628.380 kb on - strand, within CA265_RS06580at 1628.445 kb on + strand, within CA265_RS06580at 1628.446 kb on - strand, within CA265_RS06580at 1628.458 kb on + strand, within CA265_RS06580at 1628.492 kb on - strand, within CA265_RS06580at 1628.500 kb on - strand, within CA265_RS06580at 1628.560 kb on + strand, within CA265_RS06580at 1628.582 kb on + strandat 1628.647 kb on - strandat 1628.667 kb on - strandat 1628.727 kb on + strandat 1628.773 kb on + strandat 1628.774 kb on - strandat 1628.776 kb on - strandat 1628.822 kb on - strandat 1628.822 kb on - strandat 1628.932 kb on + strandat 1628.948 kb on + strand, within CA265_RS06585at 1628.998 kb on - strand, within CA265_RS06585at 1629.000 kb on + strand, within CA265_RS06585at 1629.081 kb on - strand, within CA265_RS06585at 1629.106 kb on - strand, within CA265_RS06585at 1629.169 kb on + strand, within CA265_RS06585at 1629.169 kb on + strand, within CA265_RS06585at 1629.170 kb on - strand, within CA265_RS06585at 1629.170 kb on - strand, within CA265_RS06585at 1629.226 kb on + strand, within CA265_RS06585at 1629.252 kb on + strand, within CA265_RS06585at 1629.253 kb on - strand, within CA265_RS06585at 1629.294 kb on + strand, within CA265_RS06585at 1629.329 kb on - strand, within CA265_RS06585at 1629.335 kb on - strand, within CA265_RS06585at 1629.421 kb on - strand, within CA265_RS06585at 1629.662 kb on + strandat 1629.800 kb on + strandat 1629.801 kb on - strandat 1629.883 kb on + strandat 1629.972 kb on - strand, within CA265_RS06590at 1630.238 kb on + strand, within CA265_RS06590at 1630.422 kb on - strand, within CA265_RS06590at 1630.454 kb on - strand, within CA265_RS06590at 1630.456 kb on + strand, within CA265_RS06590at 1630.457 kb on - strand, within CA265_RS06590at 1630.507 kb on - strand, within CA265_RS06590at 1630.529 kb on + strand, within CA265_RS06590at 1630.530 kb on - strand, within CA265_RS06590at 1630.590 kb on + strand, within CA265_RS06590at 1630.594 kb on - strand, within CA265_RS06590at 1630.594 kb on - strand, within CA265_RS06590at 1630.594 kb on - strand, within CA265_RS06590at 1630.603 kb on + strand, within CA265_RS06590at 1630.603 kb on + strand, within CA265_RS06590at 1630.684 kb on + strand, within CA265_RS06590at 1630.701 kb on - strand, within CA265_RS06590at 1630.705 kb on + strand, within CA265_RS06590at 1630.705 kb on + strand, within CA265_RS06590

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,627,891 + CA265_RS06580 0.48 +0.1
1,627,891 + CA265_RS06580 0.48 -0.4
1,627,898 - CA265_RS06580 0.49 -0.2
1,627,902 + CA265_RS06580 0.49 -1.1
1,627,902 + CA265_RS06580 0.49 +1.5
1,627,917 + CA265_RS06580 0.50 +0.6
1,627,962 - CA265_RS06580 0.53 +0.3
1,627,991 - CA265_RS06580 0.54 -0.1
1,627,993 - CA265_RS06580 0.55 +0.8
1,628,130 + CA265_RS06580 0.63 -1.0
1,628,130 + CA265_RS06580 0.63 +0.7
1,628,131 - CA265_RS06580 0.63 +1.3
1,628,134 - CA265_RS06580 0.63 -1.3
1,628,160 - CA265_RS06580 0.65 +0.5
1,628,177 - CA265_RS06580 0.66 +0.5
1,628,183 - CA265_RS06580 0.66 -0.9
1,628,203 - CA265_RS06580 0.67 +0.3
1,628,203 - CA265_RS06580 0.67 +0.5
1,628,207 - CA265_RS06580 0.67 -0.7
1,628,207 - CA265_RS06580 0.67 +0.0
1,628,207 - CA265_RS06580 0.67 -0.1
1,628,248 - CA265_RS06580 0.70 -0.1
1,628,251 + CA265_RS06580 0.70 +0.3
1,628,311 - CA265_RS06580 0.74 -0.7
1,628,339 + CA265_RS06580 0.75 +0.6
1,628,340 - CA265_RS06580 0.75 +0.6
1,628,369 - CA265_RS06580 0.77 +0.1
1,628,380 - CA265_RS06580 0.78 +0.9
1,628,445 + CA265_RS06580 0.82 -0.2
1,628,446 - CA265_RS06580 0.82 -1.0
1,628,458 + CA265_RS06580 0.82 +2.5
1,628,492 - CA265_RS06580 0.85 -0.3
1,628,500 - CA265_RS06580 0.85 -0.5
1,628,560 + CA265_RS06580 0.89 -0.8
1,628,582 + +0.9
1,628,647 - +0.4
1,628,667 - -0.2
1,628,727 + -0.5
1,628,773 + -0.2
1,628,774 - +0.0
1,628,776 - -0.0
1,628,822 - -0.5
1,628,822 - +0.2
1,628,932 + +0.9
1,628,948 + CA265_RS06585 0.11 +0.1
1,628,998 - CA265_RS06585 0.17 +0.5
1,629,000 + CA265_RS06585 0.17 +0.4
1,629,081 - CA265_RS06585 0.26 +3.2
1,629,106 - CA265_RS06585 0.29 +1.8
1,629,169 + CA265_RS06585 0.36 +1.5
1,629,169 + CA265_RS06585 0.36 +0.6
1,629,170 - CA265_RS06585 0.36 +1.1
1,629,170 - CA265_RS06585 0.36 +1.0
1,629,226 + CA265_RS06585 0.42 +0.8
1,629,252 + CA265_RS06585 0.45 +0.6
1,629,253 - CA265_RS06585 0.45 -0.2
1,629,294 + CA265_RS06585 0.50 +0.3
1,629,329 - CA265_RS06585 0.54 +1.4
1,629,335 - CA265_RS06585 0.54 -0.1
1,629,421 - CA265_RS06585 0.64 +0.1
1,629,662 + +0.8
1,629,800 + +0.6
1,629,801 - -0.6
1,629,883 + +0.2
1,629,972 - CA265_RS06590 0.16 +0.5
1,630,238 + CA265_RS06590 0.39 +0.5
1,630,422 - CA265_RS06590 0.54 -0.3
1,630,454 - CA265_RS06590 0.57 -0.3
1,630,456 + CA265_RS06590 0.57 +0.7
1,630,457 - CA265_RS06590 0.57 +0.5
1,630,507 - CA265_RS06590 0.62 -0.2
1,630,529 + CA265_RS06590 0.64 -0.1
1,630,530 - CA265_RS06590 0.64 +0.2
1,630,590 + CA265_RS06590 0.69 +0.8
1,630,594 - CA265_RS06590 0.69 -0.0
1,630,594 - CA265_RS06590 0.69 +0.2
1,630,594 - CA265_RS06590 0.69 -0.6
1,630,603 + CA265_RS06590 0.70 -1.0
1,630,603 + CA265_RS06590 0.70 +1.1
1,630,684 + CA265_RS06590 0.77 -0.3
1,630,701 - CA265_RS06590 0.78 +0.5
1,630,705 + CA265_RS06590 0.78 +0.7
1,630,705 + CA265_RS06590 0.78 -0.5

Or see this region's nucleotide sequence