Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS06580 and CA265_RS06585 are separated by 100 nucleotides CA265_RS06585 and CA265_RS06590 are separated by 36 nucleotides
CA265_RS06580: CA265_RS06580 - MFS transporter, at 1,627,087 to 1,628,748
_RS06580
CA265_RS06585: CA265_RS06585 - hypothetical protein, at 1,628,849 to 1,629,745
_RS06585
CA265_RS06590: CA265_RS06590 - acetyl-CoA acetyltransferase, at 1,629,782 to 1,630,957
_RS06590
Position (kb)
1628
1629
1630 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1627.891 kb on + strand, within CA265_RS06580 at 1627.891 kb on + strand, within CA265_RS06580 at 1627.898 kb on - strand, within CA265_RS06580 at 1627.902 kb on + strand, within CA265_RS06580 at 1627.902 kb on + strand, within CA265_RS06580 at 1627.917 kb on + strand, within CA265_RS06580 at 1627.962 kb on - strand, within CA265_RS06580 at 1627.991 kb on - strand, within CA265_RS06580 at 1627.993 kb on - strand, within CA265_RS06580 at 1628.130 kb on + strand, within CA265_RS06580 at 1628.130 kb on + strand, within CA265_RS06580 at 1628.131 kb on - strand, within CA265_RS06580 at 1628.134 kb on - strand, within CA265_RS06580 at 1628.160 kb on - strand, within CA265_RS06580 at 1628.177 kb on - strand, within CA265_RS06580 at 1628.183 kb on - strand, within CA265_RS06580 at 1628.203 kb on - strand, within CA265_RS06580 at 1628.203 kb on - strand, within CA265_RS06580 at 1628.207 kb on - strand, within CA265_RS06580 at 1628.207 kb on - strand, within CA265_RS06580 at 1628.207 kb on - strand, within CA265_RS06580 at 1628.248 kb on - strand, within CA265_RS06580 at 1628.251 kb on + strand, within CA265_RS06580 at 1628.311 kb on - strand, within CA265_RS06580 at 1628.339 kb on + strand, within CA265_RS06580 at 1628.340 kb on - strand, within CA265_RS06580 at 1628.369 kb on - strand, within CA265_RS06580 at 1628.380 kb on - strand, within CA265_RS06580 at 1628.445 kb on + strand, within CA265_RS06580 at 1628.446 kb on - strand, within CA265_RS06580 at 1628.458 kb on + strand, within CA265_RS06580 at 1628.492 kb on - strand, within CA265_RS06580 at 1628.500 kb on - strand, within CA265_RS06580 at 1628.560 kb on + strand, within CA265_RS06580 at 1628.582 kb on + strand at 1628.647 kb on - strand at 1628.667 kb on - strand at 1628.727 kb on + strand at 1628.773 kb on + strand at 1628.774 kb on - strand at 1628.776 kb on - strand at 1628.822 kb on - strand at 1628.822 kb on - strand at 1628.932 kb on + strand at 1628.948 kb on + strand, within CA265_RS06585 at 1628.998 kb on - strand, within CA265_RS06585 at 1629.000 kb on + strand, within CA265_RS06585 at 1629.081 kb on - strand, within CA265_RS06585 at 1629.106 kb on - strand, within CA265_RS06585 at 1629.169 kb on + strand, within CA265_RS06585 at 1629.169 kb on + strand, within CA265_RS06585 at 1629.170 kb on - strand, within CA265_RS06585 at 1629.170 kb on - strand, within CA265_RS06585 at 1629.226 kb on + strand, within CA265_RS06585 at 1629.252 kb on + strand, within CA265_RS06585 at 1629.253 kb on - strand, within CA265_RS06585 at 1629.294 kb on + strand, within CA265_RS06585 at 1629.329 kb on - strand, within CA265_RS06585 at 1629.335 kb on - strand, within CA265_RS06585 at 1629.421 kb on - strand, within CA265_RS06585 at 1629.662 kb on + strand at 1629.800 kb on + strand at 1629.801 kb on - strand at 1629.883 kb on + strand at 1629.972 kb on - strand, within CA265_RS06590 at 1630.238 kb on + strand, within CA265_RS06590 at 1630.422 kb on - strand, within CA265_RS06590 at 1630.454 kb on - strand, within CA265_RS06590 at 1630.456 kb on + strand, within CA265_RS06590 at 1630.457 kb on - strand, within CA265_RS06590 at 1630.507 kb on - strand, within CA265_RS06590 at 1630.529 kb on + strand, within CA265_RS06590 at 1630.530 kb on - strand, within CA265_RS06590 at 1630.590 kb on + strand, within CA265_RS06590 at 1630.594 kb on - strand, within CA265_RS06590 at 1630.594 kb on - strand, within CA265_RS06590 at 1630.594 kb on - strand, within CA265_RS06590 at 1630.603 kb on + strand, within CA265_RS06590 at 1630.603 kb on + strand, within CA265_RS06590 at 1630.684 kb on + strand, within CA265_RS06590 at 1630.701 kb on - strand, within CA265_RS06590 at 1630.705 kb on + strand, within CA265_RS06590 at 1630.705 kb on + strand, within CA265_RS06590
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 1,627,891 + CA265_RS06580 0.48 +0.1 1,627,891 + CA265_RS06580 0.48 -0.4 1,627,898 - CA265_RS06580 0.49 -0.2 1,627,902 + CA265_RS06580 0.49 -1.1 1,627,902 + CA265_RS06580 0.49 +1.5 1,627,917 + CA265_RS06580 0.50 +0.6 1,627,962 - CA265_RS06580 0.53 +0.3 1,627,991 - CA265_RS06580 0.54 -0.1 1,627,993 - CA265_RS06580 0.55 +0.8 1,628,130 + CA265_RS06580 0.63 -1.0 1,628,130 + CA265_RS06580 0.63 +0.7 1,628,131 - CA265_RS06580 0.63 +1.3 1,628,134 - CA265_RS06580 0.63 -1.3 1,628,160 - CA265_RS06580 0.65 +0.5 1,628,177 - CA265_RS06580 0.66 +0.5 1,628,183 - CA265_RS06580 0.66 -0.9 1,628,203 - CA265_RS06580 0.67 +0.3 1,628,203 - CA265_RS06580 0.67 +0.5 1,628,207 - CA265_RS06580 0.67 -0.7 1,628,207 - CA265_RS06580 0.67 +0.0 1,628,207 - CA265_RS06580 0.67 -0.1 1,628,248 - CA265_RS06580 0.70 -0.1 1,628,251 + CA265_RS06580 0.70 +0.3 1,628,311 - CA265_RS06580 0.74 -0.7 1,628,339 + CA265_RS06580 0.75 +0.6 1,628,340 - CA265_RS06580 0.75 +0.6 1,628,369 - CA265_RS06580 0.77 +0.1 1,628,380 - CA265_RS06580 0.78 +0.9 1,628,445 + CA265_RS06580 0.82 -0.2 1,628,446 - CA265_RS06580 0.82 -1.0 1,628,458 + CA265_RS06580 0.82 +2.5 1,628,492 - CA265_RS06580 0.85 -0.3 1,628,500 - CA265_RS06580 0.85 -0.5 1,628,560 + CA265_RS06580 0.89 -0.8 1,628,582 + +0.9 1,628,647 - +0.4 1,628,667 - -0.2 1,628,727 + -0.5 1,628,773 + -0.2 1,628,774 - +0.0 1,628,776 - -0.0 1,628,822 - -0.5 1,628,822 - +0.2 1,628,932 + +0.9 1,628,948 + CA265_RS06585 0.11 +0.1 1,628,998 - CA265_RS06585 0.17 +0.5 1,629,000 + CA265_RS06585 0.17 +0.4 1,629,081 - CA265_RS06585 0.26 +3.2 1,629,106 - CA265_RS06585 0.29 +1.8 1,629,169 + CA265_RS06585 0.36 +1.5 1,629,169 + CA265_RS06585 0.36 +0.6 1,629,170 - CA265_RS06585 0.36 +1.1 1,629,170 - CA265_RS06585 0.36 +1.0 1,629,226 + CA265_RS06585 0.42 +0.8 1,629,252 + CA265_RS06585 0.45 +0.6 1,629,253 - CA265_RS06585 0.45 -0.2 1,629,294 + CA265_RS06585 0.50 +0.3 1,629,329 - CA265_RS06585 0.54 +1.4 1,629,335 - CA265_RS06585 0.54 -0.1 1,629,421 - CA265_RS06585 0.64 +0.1 1,629,662 + +0.8 1,629,800 + +0.6 1,629,801 - -0.6 1,629,883 + +0.2 1,629,972 - CA265_RS06590 0.16 +0.5 1,630,238 + CA265_RS06590 0.39 +0.5 1,630,422 - CA265_RS06590 0.54 -0.3 1,630,454 - CA265_RS06590 0.57 -0.3 1,630,456 + CA265_RS06590 0.57 +0.7 1,630,457 - CA265_RS06590 0.57 +0.5 1,630,507 - CA265_RS06590 0.62 -0.2 1,630,529 + CA265_RS06590 0.64 -0.1 1,630,530 - CA265_RS06590 0.64 +0.2 1,630,590 + CA265_RS06590 0.69 +0.8 1,630,594 - CA265_RS06590 0.69 -0.0 1,630,594 - CA265_RS06590 0.69 +0.2 1,630,594 - CA265_RS06590 0.69 -0.6 1,630,603 + CA265_RS06590 0.70 -1.0 1,630,603 + CA265_RS06590 0.70 +1.1 1,630,684 + CA265_RS06590 0.77 -0.3 1,630,701 - CA265_RS06590 0.78 +0.5 1,630,705 + CA265_RS06590 0.78 +0.7 1,630,705 + CA265_RS06590 0.78 -0.5
Or see this region's nucleotide sequence