Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05070

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS05060 and CA265_RS05065 are separated by 137 nucleotidesCA265_RS05065 and CA265_RS05070 are separated by 222 nucleotidesCA265_RS05070 and CA265_RS05075 are separated by 190 nucleotidesCA265_RS05075 and CA265_RS05080 are separated by 483 nucleotides CA265_RS05060: CA265_RS05060 - hypothetical protein, at 1,203,765 to 1,204,076 _RS05060 CA265_RS05065: CA265_RS05065 - hypothetical protein, at 1,204,214 to 1,204,447 _RS05065 CA265_RS05070: CA265_RS05070 - Na+/H+ antiporter NhaA, at 1,204,670 to 1,205,824 _RS05070 CA265_RS05075: CA265_RS05075 - hypothetical protein, at 1,206,015 to 1,206,263 _RS05075 CA265_RS05080: CA265_RS05080 - hypothetical protein, at 1,206,747 to 1,207,667 _RS05080 Position (kb) 1204 1205 1206Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1203.960 kb on - strand, within CA265_RS05060at 1203.998 kb on - strand, within CA265_RS05060at 1203.998 kb on - strand, within CA265_RS05060at 1204.013 kb on + strand, within CA265_RS05060at 1204.016 kb on - strand, within CA265_RS05060at 1204.016 kb on - strand, within CA265_RS05060at 1204.053 kb on - strandat 1204.099 kb on + strandat 1204.102 kb on - strandat 1204.239 kb on + strand, within CA265_RS05065at 1204.247 kb on - strand, within CA265_RS05065at 1204.255 kb on + strand, within CA265_RS05065at 1204.255 kb on + strand, within CA265_RS05065at 1204.341 kb on + strand, within CA265_RS05065at 1204.359 kb on + strand, within CA265_RS05065at 1204.360 kb on - strand, within CA265_RS05065at 1204.366 kb on + strand, within CA265_RS05065at 1204.371 kb on + strand, within CA265_RS05065at 1204.378 kb on + strand, within CA265_RS05065at 1204.434 kb on + strandat 1204.435 kb on - strandat 1204.437 kb on - strandat 1204.461 kb on - strandat 1204.472 kb on - strandat 1204.474 kb on - strandat 1204.477 kb on + strandat 1204.478 kb on - strandat 1204.481 kb on + strandat 1204.534 kb on + strandat 1204.535 kb on - strandat 1204.538 kb on + strandat 1204.545 kb on + strandat 1204.579 kb on + strandat 1204.585 kb on + strandat 1204.586 kb on - strandat 1204.601 kb on + strandat 1204.807 kb on + strand, within CA265_RS05070at 1204.841 kb on + strand, within CA265_RS05070at 1204.841 kb on + strand, within CA265_RS05070at 1204.842 kb on - strand, within CA265_RS05070at 1204.937 kb on + strand, within CA265_RS05070at 1204.938 kb on - strand, within CA265_RS05070at 1204.938 kb on - strand, within CA265_RS05070at 1205.035 kb on + strand, within CA265_RS05070at 1205.044 kb on - strand, within CA265_RS05070at 1205.044 kb on - strand, within CA265_RS05070at 1205.175 kb on + strand, within CA265_RS05070at 1205.382 kb on - strand, within CA265_RS05070at 1205.474 kb on - strand, within CA265_RS05070at 1205.652 kb on + strand, within CA265_RS05070at 1205.888 kb on - strandat 1205.907 kb on + strandat 1205.961 kb on + strandat 1205.962 kb on - strandat 1205.965 kb on - strandat 1206.093 kb on - strand, within CA265_RS05075at 1206.189 kb on + strand, within CA265_RS05075at 1206.525 kb on - strandat 1206.612 kb on + strandat 1206.620 kb on + strandat 1206.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,203,960 - CA265_RS05060 0.62 -0.3
1,203,998 - CA265_RS05060 0.75 -0.1
1,203,998 - CA265_RS05060 0.75 -0.1
1,204,013 + CA265_RS05060 0.79 -0.3
1,204,016 - CA265_RS05060 0.80 +0.2
1,204,016 - CA265_RS05060 0.80 -0.4
1,204,053 - -0.2
1,204,099 + +1.4
1,204,102 - +0.5
1,204,239 + CA265_RS05065 0.11 -0.2
1,204,247 - CA265_RS05065 0.14 +0.1
1,204,255 + CA265_RS05065 0.18 +0.6
1,204,255 + CA265_RS05065 0.18 +0.4
1,204,341 + CA265_RS05065 0.54 -0.2
1,204,359 + CA265_RS05065 0.62 -0.2
1,204,360 - CA265_RS05065 0.62 +0.4
1,204,366 + CA265_RS05065 0.65 -0.2
1,204,371 + CA265_RS05065 0.67 +0.7
1,204,378 + CA265_RS05065 0.70 -1.4
1,204,434 + +0.3
1,204,435 - -0.1
1,204,437 - -0.2
1,204,461 - +0.4
1,204,472 - +0.4
1,204,474 - -0.4
1,204,477 + -0.4
1,204,478 - +0.1
1,204,481 + -0.3
1,204,534 + -0.7
1,204,535 - -0.2
1,204,538 + +0.4
1,204,545 + -0.3
1,204,579 + +0.6
1,204,585 + -0.2
1,204,586 - -0.2
1,204,601 + -0.6
1,204,807 + CA265_RS05070 0.12 -1.7
1,204,841 + CA265_RS05070 0.15 -1.7
1,204,841 + CA265_RS05070 0.15 -3.8
1,204,842 - CA265_RS05070 0.15 -2.1
1,204,937 + CA265_RS05070 0.23 -0.0
1,204,938 - CA265_RS05070 0.23 -2.8
1,204,938 - CA265_RS05070 0.23 -2.0
1,205,035 + CA265_RS05070 0.32 -2.4
1,205,044 - CA265_RS05070 0.32 -2.9
1,205,044 - CA265_RS05070 0.32 -2.7
1,205,175 + CA265_RS05070 0.44 -3.5
1,205,382 - CA265_RS05070 0.62 -4.0
1,205,474 - CA265_RS05070 0.70 -1.2
1,205,652 + CA265_RS05070 0.85 -2.3
1,205,888 - -0.4
1,205,907 + +0.0
1,205,961 + -0.0
1,205,962 - +0.3
1,205,965 - +1.0
1,206,093 - CA265_RS05075 0.31 +0.0
1,206,189 + CA265_RS05075 0.70 -0.4
1,206,525 - -0.7
1,206,612 + +0.1
1,206,620 + +0.1
1,206,621 - -3.4

Or see this region's nucleotide sequence