Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04835

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04830 and CA265_RS04835 are separated by 83 nucleotidesCA265_RS04835 and CA265_RS04840 are separated by 69 nucleotides CA265_RS04830: CA265_RS04830 - hypothetical protein, at 1,151,123 to 1,152,694 _RS04830 CA265_RS04835: CA265_RS04835 - dihydrodipicolinate synthetase, at 1,152,778 to 1,153,725 _RS04835 CA265_RS04840: CA265_RS04840 - hypothetical protein, at 1,153,795 to 1,154,952 _RS04840 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -2 -1 0 1at 1151.804 kb on + strand, within CA265_RS04830at 1151.804 kb on + strand, within CA265_RS04830at 1151.805 kb on - strand, within CA265_RS04830at 1151.809 kb on - strand, within CA265_RS04830at 1151.809 kb on - strand, within CA265_RS04830at 1151.857 kb on - strand, within CA265_RS04830at 1151.866 kb on - strand, within CA265_RS04830at 1151.896 kb on - strand, within CA265_RS04830at 1151.896 kb on - strand, within CA265_RS04830at 1151.907 kb on - strand, within CA265_RS04830at 1151.950 kb on + strand, within CA265_RS04830at 1151.950 kb on + strand, within CA265_RS04830at 1151.951 kb on - strand, within CA265_RS04830at 1151.983 kb on - strand, within CA265_RS04830at 1152.019 kb on + strand, within CA265_RS04830at 1152.020 kb on - strand, within CA265_RS04830at 1152.069 kb on + strand, within CA265_RS04830at 1152.069 kb on + strand, within CA265_RS04830at 1152.070 kb on - strand, within CA265_RS04830at 1152.070 kb on - strand, within CA265_RS04830at 1152.105 kb on + strand, within CA265_RS04830at 1152.277 kb on + strand, within CA265_RS04830at 1152.281 kb on + strand, within CA265_RS04830at 1152.282 kb on - strand, within CA265_RS04830at 1152.303 kb on - strand, within CA265_RS04830at 1152.325 kb on - strand, within CA265_RS04830at 1152.420 kb on + strand, within CA265_RS04830at 1152.459 kb on + strand, within CA265_RS04830at 1152.460 kb on - strand, within CA265_RS04830at 1152.513 kb on + strand, within CA265_RS04830at 1152.582 kb on + strandat 1152.682 kb on + strandat 1152.692 kb on + strandat 1152.696 kb on - strandat 1152.706 kb on - strandat 1152.706 kb on - strandat 1152.735 kb on + strandat 1152.735 kb on + strandat 1152.735 kb on + strandat 1152.750 kb on + strandat 1152.751 kb on - strandat 1152.757 kb on + strandat 1152.758 kb on - strandat 1152.765 kb on - strandat 1152.773 kb on + strandat 1152.794 kb on + strandat 1152.868 kb on + strandat 1153.008 kb on + strand, within CA265_RS04835at 1153.013 kb on + strand, within CA265_RS04835at 1153.033 kb on - strand, within CA265_RS04835at 1153.033 kb on - strand, within CA265_RS04835at 1153.051 kb on - strand, within CA265_RS04835at 1153.086 kb on - strand, within CA265_RS04835at 1153.086 kb on - strand, within CA265_RS04835at 1153.087 kb on + strand, within CA265_RS04835at 1153.087 kb on + strand, within CA265_RS04835at 1153.348 kb on + strand, within CA265_RS04835at 1153.446 kb on - strand, within CA265_RS04835at 1153.447 kb on + strand, within CA265_RS04835at 1153.543 kb on + strand, within CA265_RS04835at 1153.544 kb on - strand, within CA265_RS04835at 1153.590 kb on - strand, within CA265_RS04835at 1153.749 kb on + strandat 1153.756 kb on - strandat 1153.812 kb on - strandat 1153.812 kb on - strandat 1153.831 kb on - strandat 1153.831 kb on - strandat 1153.842 kb on - strandat 1153.842 kb on - strandat 1153.870 kb on + strandat 1153.871 kb on - strandat 1153.871 kb on - strandat 1153.876 kb on - strandat 1153.893 kb on + strandat 1153.943 kb on + strand, within CA265_RS04840at 1154.080 kb on - strand, within CA265_RS04840at 1154.101 kb on - strand, within CA265_RS04840at 1154.134 kb on + strand, within CA265_RS04840at 1154.134 kb on + strand, within CA265_RS04840at 1154.135 kb on - strand, within CA265_RS04840at 1154.152 kb on - strand, within CA265_RS04840at 1154.264 kb on + strand, within CA265_RS04840at 1154.277 kb on - strand, within CA265_RS04840at 1154.315 kb on - strand, within CA265_RS04840at 1154.361 kb on - strand, within CA265_RS04840at 1154.430 kb on + strand, within CA265_RS04840at 1154.430 kb on + strand, within CA265_RS04840at 1154.431 kb on - strand, within CA265_RS04840at 1154.515 kb on + strand, within CA265_RS04840at 1154.529 kb on + strand, within CA265_RS04840at 1154.529 kb on + strand, within CA265_RS04840at 1154.530 kb on - strand, within CA265_RS04840at 1154.530 kb on - strand, within CA265_RS04840at 1154.530 kb on - strand, within CA265_RS04840at 1154.530 kb on - strand, within CA265_RS04840at 1154.533 kb on + strand, within CA265_RS04840at 1154.579 kb on - strand, within CA265_RS04840

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,151,804 + CA265_RS04830 0.43 +0.6
1,151,804 + CA265_RS04830 0.43 +0.5
1,151,805 - CA265_RS04830 0.43 +1.1
1,151,809 - CA265_RS04830 0.44 +0.4
1,151,809 - CA265_RS04830 0.44 -0.7
1,151,857 - CA265_RS04830 0.47 -0.1
1,151,866 - CA265_RS04830 0.47 -1.9
1,151,896 - CA265_RS04830 0.49 -0.1
1,151,896 - CA265_RS04830 0.49 +0.1
1,151,907 - CA265_RS04830 0.50 +0.5
1,151,950 + CA265_RS04830 0.53 +0.1
1,151,950 + CA265_RS04830 0.53 +0.3
1,151,951 - CA265_RS04830 0.53 -0.4
1,151,983 - CA265_RS04830 0.55 -0.4
1,152,019 + CA265_RS04830 0.57 +0.5
1,152,020 - CA265_RS04830 0.57 +0.4
1,152,069 + CA265_RS04830 0.60 +0.2
1,152,069 + CA265_RS04830 0.60 +1.0
1,152,070 - CA265_RS04830 0.60 -0.2
1,152,070 - CA265_RS04830 0.60 -0.2
1,152,105 + CA265_RS04830 0.62 -0.3
1,152,277 + CA265_RS04830 0.73 +0.0
1,152,281 + CA265_RS04830 0.74 -0.2
1,152,282 - CA265_RS04830 0.74 -0.2
1,152,303 - CA265_RS04830 0.75 -0.2
1,152,325 - CA265_RS04830 0.76 +0.4
1,152,420 + CA265_RS04830 0.83 +0.7
1,152,459 + CA265_RS04830 0.85 -0.0
1,152,460 - CA265_RS04830 0.85 +0.4
1,152,513 + CA265_RS04830 0.88 +0.2
1,152,582 + -0.5
1,152,682 + -0.1
1,152,692 + -0.2
1,152,696 - -0.1
1,152,706 - +0.4
1,152,706 - -0.3
1,152,735 + +0.6
1,152,735 + -0.9
1,152,735 + -0.1
1,152,750 + -1.6
1,152,751 - +0.7
1,152,757 + +0.0
1,152,758 - -0.1
1,152,765 - -0.6
1,152,773 + -1.1
1,152,794 + -0.2
1,152,868 + +1.7
1,153,008 + CA265_RS04835 0.24 +0.9
1,153,013 + CA265_RS04835 0.25 +0.9
1,153,033 - CA265_RS04835 0.27 +0.4
1,153,033 - CA265_RS04835 0.27 +0.6
1,153,051 - CA265_RS04835 0.29 -0.3
1,153,086 - CA265_RS04835 0.32 +1.1
1,153,086 - CA265_RS04835 0.32 -0.3
1,153,087 + CA265_RS04835 0.33 +0.5
1,153,087 + CA265_RS04835 0.33 +0.4
1,153,348 + CA265_RS04835 0.60 +0.7
1,153,446 - CA265_RS04835 0.70 +0.0
1,153,447 + CA265_RS04835 0.71 +1.1
1,153,543 + CA265_RS04835 0.81 -0.0
1,153,544 - CA265_RS04835 0.81 +1.0
1,153,590 - CA265_RS04835 0.86 +0.0
1,153,749 + -0.9
1,153,756 - -0.9
1,153,812 - -0.4
1,153,812 - -0.1
1,153,831 - -0.4
1,153,831 - -0.0
1,153,842 - +0.3
1,153,842 - -0.2
1,153,870 + +0.2
1,153,871 - -0.6
1,153,871 - -0.5
1,153,876 - -1.2
1,153,893 + -0.5
1,153,943 + CA265_RS04840 0.13 +0.3
1,154,080 - CA265_RS04840 0.25 -0.1
1,154,101 - CA265_RS04840 0.26 -0.3
1,154,134 + CA265_RS04840 0.29 -0.4
1,154,134 + CA265_RS04840 0.29 +0.5
1,154,135 - CA265_RS04840 0.29 +0.6
1,154,152 - CA265_RS04840 0.31 +0.5
1,154,264 + CA265_RS04840 0.41 +0.5
1,154,277 - CA265_RS04840 0.42 -0.4
1,154,315 - CA265_RS04840 0.45 +0.3
1,154,361 - CA265_RS04840 0.49 -0.9
1,154,430 + CA265_RS04840 0.55 +0.8
1,154,430 + CA265_RS04840 0.55 +0.9
1,154,431 - CA265_RS04840 0.55 -1.7
1,154,515 + CA265_RS04840 0.62 +0.9
1,154,529 + CA265_RS04840 0.63 -0.0
1,154,529 + CA265_RS04840 0.63 -0.4
1,154,530 - CA265_RS04840 0.63 +0.3
1,154,530 - CA265_RS04840 0.63 -0.2
1,154,530 - CA265_RS04840 0.63 -0.0
1,154,530 - CA265_RS04840 0.63 +0.8
1,154,533 + CA265_RS04840 0.64 +0.4
1,154,579 - CA265_RS04840 0.68 +0.6

Or see this region's nucleotide sequence