Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04830 and CA265_RS04835 are separated by 83 nucleotides CA265_RS04835 and CA265_RS04840 are separated by 69 nucleotides
CA265_RS04830: CA265_RS04830 - hypothetical protein, at 1,151,123 to 1,152,694
_RS04830
CA265_RS04835: CA265_RS04835 - dihydrodipicolinate synthetase, at 1,152,778 to 1,153,725
_RS04835
CA265_RS04840: CA265_RS04840 - hypothetical protein, at 1,153,795 to 1,154,952
_RS04840
Position (kb)
1152
1153
1154 Strain fitness (log2 ratio)
-2
-1
0
1 at 1151.804 kb on + strand, within CA265_RS04830 at 1151.804 kb on + strand, within CA265_RS04830 at 1151.805 kb on - strand, within CA265_RS04830 at 1151.809 kb on - strand, within CA265_RS04830 at 1151.809 kb on - strand, within CA265_RS04830 at 1151.857 kb on - strand, within CA265_RS04830 at 1151.866 kb on - strand, within CA265_RS04830 at 1151.896 kb on - strand, within CA265_RS04830 at 1151.896 kb on - strand, within CA265_RS04830 at 1151.907 kb on - strand, within CA265_RS04830 at 1151.950 kb on + strand, within CA265_RS04830 at 1151.950 kb on + strand, within CA265_RS04830 at 1151.951 kb on - strand, within CA265_RS04830 at 1151.983 kb on - strand, within CA265_RS04830 at 1152.019 kb on + strand, within CA265_RS04830 at 1152.020 kb on - strand, within CA265_RS04830 at 1152.069 kb on + strand, within CA265_RS04830 at 1152.069 kb on + strand, within CA265_RS04830 at 1152.070 kb on - strand, within CA265_RS04830 at 1152.070 kb on - strand, within CA265_RS04830 at 1152.105 kb on + strand, within CA265_RS04830 at 1152.277 kb on + strand, within CA265_RS04830 at 1152.281 kb on + strand, within CA265_RS04830 at 1152.282 kb on - strand, within CA265_RS04830 at 1152.303 kb on - strand, within CA265_RS04830 at 1152.325 kb on - strand, within CA265_RS04830 at 1152.420 kb on + strand, within CA265_RS04830 at 1152.459 kb on + strand, within CA265_RS04830 at 1152.460 kb on - strand, within CA265_RS04830 at 1152.513 kb on + strand, within CA265_RS04830 at 1152.582 kb on + strand at 1152.682 kb on + strand at 1152.692 kb on + strand at 1152.696 kb on - strand at 1152.706 kb on - strand at 1152.706 kb on - strand at 1152.735 kb on + strand at 1152.735 kb on + strand at 1152.735 kb on + strand at 1152.750 kb on + strand at 1152.751 kb on - strand at 1152.757 kb on + strand at 1152.758 kb on - strand at 1152.765 kb on - strand at 1152.773 kb on + strand at 1152.794 kb on + strand at 1152.868 kb on + strand at 1153.008 kb on + strand, within CA265_RS04835 at 1153.013 kb on + strand, within CA265_RS04835 at 1153.033 kb on - strand, within CA265_RS04835 at 1153.033 kb on - strand, within CA265_RS04835 at 1153.051 kb on - strand, within CA265_RS04835 at 1153.086 kb on - strand, within CA265_RS04835 at 1153.086 kb on - strand, within CA265_RS04835 at 1153.087 kb on + strand, within CA265_RS04835 at 1153.087 kb on + strand, within CA265_RS04835 at 1153.348 kb on + strand, within CA265_RS04835 at 1153.446 kb on - strand, within CA265_RS04835 at 1153.447 kb on + strand, within CA265_RS04835 at 1153.543 kb on + strand, within CA265_RS04835 at 1153.544 kb on - strand, within CA265_RS04835 at 1153.590 kb on - strand, within CA265_RS04835 at 1153.749 kb on + strand at 1153.756 kb on - strand at 1153.812 kb on - strand at 1153.812 kb on - strand at 1153.831 kb on - strand at 1153.831 kb on - strand at 1153.842 kb on - strand at 1153.842 kb on - strand at 1153.870 kb on + strand at 1153.871 kb on - strand at 1153.871 kb on - strand at 1153.876 kb on - strand at 1153.893 kb on + strand at 1153.943 kb on + strand, within CA265_RS04840 at 1154.080 kb on - strand, within CA265_RS04840 at 1154.101 kb on - strand, within CA265_RS04840 at 1154.134 kb on + strand, within CA265_RS04840 at 1154.134 kb on + strand, within CA265_RS04840 at 1154.135 kb on - strand, within CA265_RS04840 at 1154.152 kb on - strand, within CA265_RS04840 at 1154.264 kb on + strand, within CA265_RS04840 at 1154.277 kb on - strand, within CA265_RS04840 at 1154.315 kb on - strand, within CA265_RS04840 at 1154.361 kb on - strand, within CA265_RS04840 at 1154.430 kb on + strand, within CA265_RS04840 at 1154.430 kb on + strand, within CA265_RS04840 at 1154.431 kb on - strand, within CA265_RS04840 at 1154.515 kb on + strand, within CA265_RS04840 at 1154.529 kb on + strand, within CA265_RS04840 at 1154.529 kb on + strand, within CA265_RS04840 at 1154.530 kb on - strand, within CA265_RS04840 at 1154.530 kb on - strand, within CA265_RS04840 at 1154.530 kb on - strand, within CA265_RS04840 at 1154.530 kb on - strand, within CA265_RS04840 at 1154.533 kb on + strand, within CA265_RS04840 at 1154.579 kb on - strand, within CA265_RS04840
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 1,151,804 + CA265_RS04830 0.43 +0.6 1,151,804 + CA265_RS04830 0.43 +0.5 1,151,805 - CA265_RS04830 0.43 +1.1 1,151,809 - CA265_RS04830 0.44 +0.4 1,151,809 - CA265_RS04830 0.44 -0.7 1,151,857 - CA265_RS04830 0.47 -0.1 1,151,866 - CA265_RS04830 0.47 -1.9 1,151,896 - CA265_RS04830 0.49 -0.1 1,151,896 - CA265_RS04830 0.49 +0.1 1,151,907 - CA265_RS04830 0.50 +0.5 1,151,950 + CA265_RS04830 0.53 +0.1 1,151,950 + CA265_RS04830 0.53 +0.3 1,151,951 - CA265_RS04830 0.53 -0.4 1,151,983 - CA265_RS04830 0.55 -0.4 1,152,019 + CA265_RS04830 0.57 +0.5 1,152,020 - CA265_RS04830 0.57 +0.4 1,152,069 + CA265_RS04830 0.60 +0.2 1,152,069 + CA265_RS04830 0.60 +1.0 1,152,070 - CA265_RS04830 0.60 -0.2 1,152,070 - CA265_RS04830 0.60 -0.2 1,152,105 + CA265_RS04830 0.62 -0.3 1,152,277 + CA265_RS04830 0.73 +0.0 1,152,281 + CA265_RS04830 0.74 -0.2 1,152,282 - CA265_RS04830 0.74 -0.2 1,152,303 - CA265_RS04830 0.75 -0.2 1,152,325 - CA265_RS04830 0.76 +0.4 1,152,420 + CA265_RS04830 0.83 +0.7 1,152,459 + CA265_RS04830 0.85 -0.0 1,152,460 - CA265_RS04830 0.85 +0.4 1,152,513 + CA265_RS04830 0.88 +0.2 1,152,582 + -0.5 1,152,682 + -0.1 1,152,692 + -0.2 1,152,696 - -0.1 1,152,706 - +0.4 1,152,706 - -0.3 1,152,735 + +0.6 1,152,735 + -0.9 1,152,735 + -0.1 1,152,750 + -1.6 1,152,751 - +0.7 1,152,757 + +0.0 1,152,758 - -0.1 1,152,765 - -0.6 1,152,773 + -1.1 1,152,794 + -0.2 1,152,868 + +1.7 1,153,008 + CA265_RS04835 0.24 +0.9 1,153,013 + CA265_RS04835 0.25 +0.9 1,153,033 - CA265_RS04835 0.27 +0.4 1,153,033 - CA265_RS04835 0.27 +0.6 1,153,051 - CA265_RS04835 0.29 -0.3 1,153,086 - CA265_RS04835 0.32 +1.1 1,153,086 - CA265_RS04835 0.32 -0.3 1,153,087 + CA265_RS04835 0.33 +0.5 1,153,087 + CA265_RS04835 0.33 +0.4 1,153,348 + CA265_RS04835 0.60 +0.7 1,153,446 - CA265_RS04835 0.70 +0.0 1,153,447 + CA265_RS04835 0.71 +1.1 1,153,543 + CA265_RS04835 0.81 -0.0 1,153,544 - CA265_RS04835 0.81 +1.0 1,153,590 - CA265_RS04835 0.86 +0.0 1,153,749 + -0.9 1,153,756 - -0.9 1,153,812 - -0.4 1,153,812 - -0.1 1,153,831 - -0.4 1,153,831 - -0.0 1,153,842 - +0.3 1,153,842 - -0.2 1,153,870 + +0.2 1,153,871 - -0.6 1,153,871 - -0.5 1,153,876 - -1.2 1,153,893 + -0.5 1,153,943 + CA265_RS04840 0.13 +0.3 1,154,080 - CA265_RS04840 0.25 -0.1 1,154,101 - CA265_RS04840 0.26 -0.3 1,154,134 + CA265_RS04840 0.29 -0.4 1,154,134 + CA265_RS04840 0.29 +0.5 1,154,135 - CA265_RS04840 0.29 +0.6 1,154,152 - CA265_RS04840 0.31 +0.5 1,154,264 + CA265_RS04840 0.41 +0.5 1,154,277 - CA265_RS04840 0.42 -0.4 1,154,315 - CA265_RS04840 0.45 +0.3 1,154,361 - CA265_RS04840 0.49 -0.9 1,154,430 + CA265_RS04840 0.55 +0.8 1,154,430 + CA265_RS04840 0.55 +0.9 1,154,431 - CA265_RS04840 0.55 -1.7 1,154,515 + CA265_RS04840 0.62 +0.9 1,154,529 + CA265_RS04840 0.63 -0.0 1,154,529 + CA265_RS04840 0.63 -0.4 1,154,530 - CA265_RS04840 0.63 +0.3 1,154,530 - CA265_RS04840 0.63 -0.2 1,154,530 - CA265_RS04840 0.63 -0.0 1,154,530 - CA265_RS04840 0.63 +0.8 1,154,533 + CA265_RS04840 0.64 +0.4 1,154,579 - CA265_RS04840 0.68 +0.6
Or see this region's nucleotide sequence