Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03780 and CA265_RS03785 are separated by 179 nucleotides CA265_RS03785 and CA265_RS03790 are separated by 82 nucleotides CA265_RS03790 and CA265_RS03795 overlap by 4 nucleotides CA265_RS03795 and CA265_RS03800 are separated by 387 nucleotides
CA265_RS03780: CA265_RS03780 - transcriptional regulator, at 895,580 to 896,470
_RS03780
CA265_RS03785: CA265_RS03785 - hypothetical protein, at 896,650 to 897,189
_RS03785
CA265_RS03790: CA265_RS03790 - hypothetical protein, at 897,272 to 897,769
_RS03790
CA265_RS03795: CA265_RS03795 - hypothetical protein, at 897,766 to 898,158
_RS03795
CA265_RS03800: CA265_RS03800 - TetR family transcriptional regulator, at 898,546 to 899,169
_RS03800
Position (kb) 897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 896.287 kb on + strand, within CA265_RS03780 at 896.396 kb on + strand at 896.397 kb on - strand at 896.404 kb on + strand at 896.404 kb on + strand at 896.405 kb on - strand at 896.405 kb on - strand at 896.430 kb on + strand at 896.430 kb on + strand at 896.430 kb on + strand at 896.450 kb on + strand at 896.511 kb on - strand at 896.635 kb on - strand at 896.665 kb on + strand at 896.665 kb on + strand at 896.675 kb on + strand at 896.675 kb on + strand at 896.676 kb on - strand at 896.703 kb on - strand at 896.706 kb on - strand, within CA265_RS03785 at 896.742 kb on + strand, within CA265_RS03785 at 896.742 kb on + strand, within CA265_RS03785 at 896.995 kb on + strand, within CA265_RS03785 at 896.996 kb on - strand, within CA265_RS03785 at 896.996 kb on - strand, within CA265_RS03785 at 896.996 kb on - strand, within CA265_RS03785 at 896.997 kb on + strand, within CA265_RS03785 at 896.997 kb on + strand, within CA265_RS03785 at 897.002 kb on + strand, within CA265_RS03785 at 897.166 kb on - strand at 897.213 kb on + strand at 897.214 kb on - strand at 897.236 kb on + strand at 897.236 kb on + strand at 897.243 kb on - strand at 897.325 kb on + strand, within CA265_RS03790 at 897.358 kb on + strand, within CA265_RS03790 at 897.389 kb on + strand, within CA265_RS03790 at 897.538 kb on + strand, within CA265_RS03790 at 897.604 kb on + strand, within CA265_RS03790 at 897.604 kb on + strand, within CA265_RS03790 at 897.604 kb on + strand, within CA265_RS03790 at 897.710 kb on + strand, within CA265_RS03790 at 897.781 kb on - strand at 897.786 kb on + strand at 897.786 kb on + strand at 897.856 kb on + strand, within CA265_RS03795 at 897.865 kb on + strand, within CA265_RS03795 at 897.912 kb on + strand, within CA265_RS03795 at 897.913 kb on - strand, within CA265_RS03795 at 897.913 kb on - strand, within CA265_RS03795 at 897.944 kb on - strand, within CA265_RS03795 at 897.958 kb on - strand, within CA265_RS03795 at 897.958 kb on - strand, within CA265_RS03795 at 897.959 kb on + strand, within CA265_RS03795 at 897.960 kb on - strand, within CA265_RS03795 at 897.960 kb on - strand, within CA265_RS03795 at 897.964 kb on - strand at 897.990 kb on + strand, within CA265_RS03795 at 898.034 kb on - strand, within CA265_RS03795 at 898.044 kb on - strand, within CA265_RS03795 at 898.047 kb on + strand, within CA265_RS03795 at 898.048 kb on - strand, within CA265_RS03795 at 898.096 kb on - strand, within CA265_RS03795 at 898.198 kb on + strand at 898.215 kb on + strand at 898.237 kb on + strand at 898.243 kb on - strand at 898.321 kb on + strand at 898.349 kb on + strand at 898.374 kb on - strand at 898.391 kb on + strand at 898.470 kb on - strand at 898.489 kb on + strand at 898.496 kb on - strand at 898.499 kb on + strand at 898.499 kb on + strand at 898.500 kb on - strand at 898.561 kb on - strand at 898.579 kb on - strand at 898.656 kb on - strand, within CA265_RS03800 at 898.668 kb on - strand, within CA265_RS03800
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 896,287 + CA265_RS03780 0.79 -0.3 896,396 + -1.5 896,397 - -1.0 896,404 + +0.5 896,404 + -0.3 896,405 - +1.9 896,405 - +0.2 896,430 + +0.3 896,430 + -0.3 896,430 + -1.1 896,450 + +0.5 896,511 - +0.3 896,635 - +0.5 896,665 + -1.9 896,665 + -0.3 896,675 + +0.5 896,675 + +0.7 896,676 - +0.3 896,703 - -0.1 896,706 - CA265_RS03785 0.10 -1.2 896,742 + CA265_RS03785 0.17 -0.3 896,742 + CA265_RS03785 0.17 -0.6 896,995 + CA265_RS03785 0.64 +0.7 896,996 - CA265_RS03785 0.64 -0.5 896,996 - CA265_RS03785 0.64 -0.2 896,996 - CA265_RS03785 0.64 +0.6 896,997 + CA265_RS03785 0.64 -0.4 896,997 + CA265_RS03785 0.64 +0.3 897,002 + CA265_RS03785 0.65 -0.4 897,166 - -0.9 897,213 + +0.9 897,214 - -0.4 897,236 + +0.2 897,236 + -0.1 897,243 - -0.0 897,325 + CA265_RS03790 0.11 -3.3 897,358 + CA265_RS03790 0.17 -1.2 897,389 + CA265_RS03790 0.23 -2.8 897,538 + CA265_RS03790 0.53 -1.7 897,604 + CA265_RS03790 0.67 -1.2 897,604 + CA265_RS03790 0.67 -0.2 897,604 + CA265_RS03790 0.67 -2.1 897,710 + CA265_RS03790 0.88 -2.3 897,781 - +1.2 897,786 + -0.0 897,786 + +1.0 897,856 + CA265_RS03795 0.23 +0.0 897,865 + CA265_RS03795 0.25 +0.2 897,912 + CA265_RS03795 0.37 +0.3 897,913 - CA265_RS03795 0.37 +0.4 897,913 - CA265_RS03795 0.37 -0.3 897,944 - CA265_RS03795 0.45 -0.7 897,958 - CA265_RS03795 0.49 -0.9 897,958 - CA265_RS03795 0.49 -0.1 897,959 + CA265_RS03795 0.49 +1.4 897,960 - CA265_RS03795 0.49 +0.4 897,960 - CA265_RS03795 0.49 -1.2 897,964 - +1.0 897,990 + CA265_RS03795 0.57 +0.2 898,034 - CA265_RS03795 0.68 +0.2 898,044 - CA265_RS03795 0.71 -0.3 898,047 + CA265_RS03795 0.72 +0.1 898,048 - CA265_RS03795 0.72 -1.0 898,096 - CA265_RS03795 0.84 -1.3 898,198 + +0.4 898,215 + +0.6 898,237 + +0.3 898,243 - +0.6 898,321 + +0.6 898,349 + -1.5 898,374 - -0.4 898,391 + -0.4 898,470 - -1.4 898,489 + -0.4 898,496 - +0.8 898,499 + -0.2 898,499 + +0.1 898,500 - -0.3 898,561 - +0.0 898,579 - +0.1 898,656 - CA265_RS03800 0.18 +0.4 898,668 - CA265_RS03800 0.20 -0.1
Or see this region's nucleotide sequence