Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03665

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03660 and CA265_RS03665 overlap by 82 nucleotidesCA265_RS03665 and CA265_RS03670 are separated by 16 nucleotidesCA265_RS03670 and CA265_RS03675 are separated by 25 nucleotides CA265_RS03660: CA265_RS03660 - hypothetical protein, at 873,995 to 875,047 _RS03660 CA265_RS03665: CA265_RS03665 - hypothetical protein, at 874,966 to 875,478 _RS03665 CA265_RS03670: CA265_RS03670 - O-acetyl-ADP-ribose deacetylase, at 875,495 to 876,016 _RS03670 CA265_RS03675: CA265_RS03675 - hypothetical protein, at 876,042 to 876,695 _RS03675 Position (kb) 874 875 876Strain fitness (log2 ratio) -2 -1 0 1at 873.969 kb on + strandat 873.974 kb on - strandat 873.982 kb on + strandat 873.983 kb on - strandat 874.033 kb on - strandat 874.083 kb on - strandat 874.109 kb on - strand, within CA265_RS03660at 874.197 kb on - strand, within CA265_RS03660at 874.217 kb on - strand, within CA265_RS03660at 874.218 kb on + strand, within CA265_RS03660at 874.219 kb on - strand, within CA265_RS03660at 874.219 kb on - strand, within CA265_RS03660at 874.275 kb on + strand, within CA265_RS03660at 874.275 kb on + strand, within CA265_RS03660at 874.276 kb on - strand, within CA265_RS03660at 874.341 kb on + strand, within CA265_RS03660at 874.405 kb on - strand, within CA265_RS03660at 874.409 kb on + strand, within CA265_RS03660at 874.421 kb on - strand, within CA265_RS03660at 874.437 kb on - strand, within CA265_RS03660at 874.439 kb on - strand, within CA265_RS03660at 874.471 kb on + strand, within CA265_RS03660at 874.508 kb on - strand, within CA265_RS03660at 874.512 kb on - strand, within CA265_RS03660at 874.512 kb on - strand, within CA265_RS03660at 874.512 kb on - strand, within CA265_RS03660at 874.549 kb on + strand, within CA265_RS03660at 874.571 kb on - strand, within CA265_RS03660at 874.658 kb on - strand, within CA265_RS03660at 874.659 kb on + strand, within CA265_RS03660at 874.685 kb on + strand, within CA265_RS03660at 874.705 kb on - strand, within CA265_RS03660at 874.725 kb on + strand, within CA265_RS03660at 874.726 kb on - strand, within CA265_RS03660at 874.752 kb on - strand, within CA265_RS03660at 874.767 kb on + strand, within CA265_RS03660at 874.792 kb on + strand, within CA265_RS03660at 874.798 kb on + strand, within CA265_RS03660at 874.824 kb on + strand, within CA265_RS03660at 874.852 kb on + strand, within CA265_RS03660at 874.853 kb on - strand, within CA265_RS03660at 874.853 kb on - strand, within CA265_RS03660at 874.855 kb on - strand, within CA265_RS03660at 874.878 kb on + strand, within CA265_RS03660at 874.879 kb on - strand, within CA265_RS03660at 874.881 kb on + strand, within CA265_RS03660at 874.882 kb on - strand, within CA265_RS03660at 874.910 kb on - strand, within CA265_RS03660at 874.929 kb on - strand, within CA265_RS03660at 874.947 kb on - strandat 874.988 kb on - strandat 875.045 kb on + strandat 875.076 kb on - strand, within CA265_RS03665at 875.076 kb on - strand, within CA265_RS03665at 875.080 kb on - strand, within CA265_RS03665at 875.086 kb on - strand, within CA265_RS03665at 875.249 kb on - strand, within CA265_RS03665at 875.300 kb on + strand, within CA265_RS03665at 875.328 kb on + strand, within CA265_RS03665at 875.358 kb on + strand, within CA265_RS03665at 875.427 kb on - strandat 875.458 kb on - strandat 875.471 kb on - strandat 875.471 kb on - strandat 875.472 kb on + strandat 875.473 kb on - strandat 875.482 kb on + strandat 875.534 kb on - strandat 875.628 kb on + strand, within CA265_RS03670at 875.718 kb on - strand, within CA265_RS03670at 875.864 kb on + strand, within CA265_RS03670at 875.882 kb on - strand, within CA265_RS03670at 875.882 kb on - strand, within CA265_RS03670at 875.883 kb on + strand, within CA265_RS03670at 875.884 kb on - strand, within CA265_RS03670at 875.893 kb on + strand, within CA265_RS03670at 875.984 kb on + strandat 876.018 kb on - strandat 876.018 kb on - strandat 876.108 kb on - strand, within CA265_RS03675at 876.304 kb on + strand, within CA265_RS03675at 876.304 kb on + strand, within CA265_RS03675at 876.305 kb on - strand, within CA265_RS03675at 876.333 kb on + strand, within CA265_RS03675

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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873,969 + -0.0
873,974 - -0.1
873,982 + -1.2
873,983 - -0.8
874,033 - +0.8
874,083 - -0.1
874,109 - CA265_RS03660 0.11 -0.4
874,197 - CA265_RS03660 0.19 -0.7
874,217 - CA265_RS03660 0.21 +1.2
874,218 + CA265_RS03660 0.21 +0.0
874,219 - CA265_RS03660 0.21 -0.5
874,219 - CA265_RS03660 0.21 -0.1
874,275 + CA265_RS03660 0.27 +0.4
874,275 + CA265_RS03660 0.27 -0.3
874,276 - CA265_RS03660 0.27 -0.1
874,341 + CA265_RS03660 0.33 -1.3
874,405 - CA265_RS03660 0.39 +1.3
874,409 + CA265_RS03660 0.39 +0.1
874,421 - CA265_RS03660 0.40 +0.0
874,437 - CA265_RS03660 0.42 -0.9
874,439 - CA265_RS03660 0.42 -1.2
874,471 + CA265_RS03660 0.45 +0.9
874,508 - CA265_RS03660 0.49 +0.3
874,512 - CA265_RS03660 0.49 +0.7
874,512 - CA265_RS03660 0.49 -0.2
874,512 - CA265_RS03660 0.49 -0.6
874,549 + CA265_RS03660 0.53 +0.2
874,571 - CA265_RS03660 0.55 -0.7
874,658 - CA265_RS03660 0.63 -0.4
874,659 + CA265_RS03660 0.63 -0.5
874,685 + CA265_RS03660 0.66 -0.6
874,705 - CA265_RS03660 0.67 +0.4
874,725 + CA265_RS03660 0.69 -0.8
874,726 - CA265_RS03660 0.69 -1.5
874,752 - CA265_RS03660 0.72 +0.7
874,767 + CA265_RS03660 0.73 +0.3
874,792 + CA265_RS03660 0.76 +0.4
874,798 + CA265_RS03660 0.76 -1.4
874,824 + CA265_RS03660 0.79 -0.2
874,852 + CA265_RS03660 0.81 +0.2
874,853 - CA265_RS03660 0.81 -1.3
874,853 - CA265_RS03660 0.81 +0.4
874,855 - CA265_RS03660 0.82 -0.9
874,878 + CA265_RS03660 0.84 -0.5
874,879 - CA265_RS03660 0.84 -0.0
874,881 + CA265_RS03660 0.84 -1.3
874,882 - CA265_RS03660 0.84 -1.9
874,910 - CA265_RS03660 0.87 -0.3
874,929 - CA265_RS03660 0.89 +0.2
874,947 - +1.0
874,988 - +0.2
875,045 + +0.5
875,076 - CA265_RS03665 0.21 +0.6
875,076 - CA265_RS03665 0.21 -0.0
875,080 - CA265_RS03665 0.22 -0.2
875,086 - CA265_RS03665 0.23 +0.5
875,249 - CA265_RS03665 0.55 +0.3
875,300 + CA265_RS03665 0.65 +1.1
875,328 + CA265_RS03665 0.71 -0.3
875,358 + CA265_RS03665 0.76 +1.0
875,427 - -0.5
875,458 - -0.6
875,471 - -0.6
875,471 - -0.3
875,472 + -0.0
875,473 - +0.3
875,482 + +0.0
875,534 - -0.3
875,628 + CA265_RS03670 0.25 -2.0
875,718 - CA265_RS03670 0.43 -0.8
875,864 + CA265_RS03670 0.71 -0.1
875,882 - CA265_RS03670 0.74 -0.7
875,882 - CA265_RS03670 0.74 -0.6
875,883 + CA265_RS03670 0.74 -1.0
875,884 - CA265_RS03670 0.75 +0.0
875,893 + CA265_RS03670 0.76 -0.2
875,984 + +1.0
876,018 - +0.7
876,018 - +0.1
876,108 - CA265_RS03675 0.10 +1.3
876,304 + CA265_RS03675 0.40 +0.2
876,304 + CA265_RS03675 0.40 -0.0
876,305 - CA265_RS03675 0.40 +0.1
876,333 + CA265_RS03675 0.44 -0.0

Or see this region's nucleotide sequence