Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03615 and CA265_RS03620 are separated by 1 nucleotides CA265_RS03620 and CA265_RS03625 are separated by 66 nucleotides CA265_RS03625 and CA265_RS03630 are separated by 1 nucleotides
CA265_RS03615: CA265_RS03615 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 864,549 to 865,298
_RS03615
CA265_RS03620: CA265_RS03620 - imidazole glycerol phosphate synthase subunit HisH, at 865,300 to 865,932
_RS03620
CA265_RS03625: CA265_RS03625 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 865,999 to 867,132
_RS03625
CA265_RS03630: CA265_RS03630 - histidinol-phosphate transaminase, at 867,134 to 868,174
_RS03630
Position (kb) 865
866
867
868 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 865.044 kb on + strand, within CA265_RS03615 at 865.121 kb on + strand, within CA265_RS03615 at 865.143 kb on + strand, within CA265_RS03615 at 865.154 kb on + strand, within CA265_RS03615 at 865.154 kb on + strand, within CA265_RS03615 at 865.154 kb on + strand, within CA265_RS03615 at 865.154 kb on + strand, within CA265_RS03615 at 865.184 kb on - strand, within CA265_RS03615 at 865.216 kb on + strand, within CA265_RS03615 at 865.281 kb on - strand at 865.290 kb on + strand at 865.291 kb on - strand at 865.291 kb on - strand at 865.291 kb on - strand at 865.295 kb on - strand at 865.302 kb on - strand at 865.302 kb on - strand at 865.454 kb on + strand, within CA265_RS03620 at 865.461 kb on + strand, within CA265_RS03620 at 865.481 kb on + strand, within CA265_RS03620 at 865.482 kb on - strand, within CA265_RS03620 at 865.491 kb on + strand, within CA265_RS03620 at 865.494 kb on + strand, within CA265_RS03620 at 865.494 kb on + strand, within CA265_RS03620 at 865.513 kb on + strand, within CA265_RS03620 at 865.612 kb on + strand, within CA265_RS03620 at 865.807 kb on + strand, within CA265_RS03620 at 865.817 kb on + strand, within CA265_RS03620 at 865.837 kb on + strand, within CA265_RS03620 at 865.838 kb on - strand, within CA265_RS03620 at 865.942 kb on + strand at 865.944 kb on + strand at 865.954 kb on - strand at 866.001 kb on - strand at 866.134 kb on + strand, within CA265_RS03625 at 866.157 kb on + strand, within CA265_RS03625 at 866.178 kb on - strand, within CA265_RS03625 at 866.320 kb on + strand, within CA265_RS03625 at 866.333 kb on - strand, within CA265_RS03625 at 866.378 kb on - strand, within CA265_RS03625 at 866.398 kb on - strand, within CA265_RS03625 at 866.401 kb on + strand, within CA265_RS03625 at 866.401 kb on + strand, within CA265_RS03625 at 866.402 kb on - strand, within CA265_RS03625 at 866.420 kb on - strand, within CA265_RS03625 at 866.536 kb on - strand, within CA265_RS03625 at 866.601 kb on + strand, within CA265_RS03625 at 866.655 kb on + strand, within CA265_RS03625 at 866.780 kb on + strand, within CA265_RS03625 at 866.902 kb on - strand, within CA265_RS03625 at 866.993 kb on + strand, within CA265_RS03625 at 867.023 kb on + strand at 867.024 kb on - strand at 867.027 kb on - strand at 867.067 kb on + strand at 867.115 kb on - strand at 867.122 kb on - strand at 867.158 kb on + strand at 867.181 kb on + strand at 867.263 kb on - strand, within CA265_RS03630 at 867.363 kb on - strand, within CA265_RS03630 at 867.465 kb on + strand, within CA265_RS03630 at 867.465 kb on + strand, within CA265_RS03630 at 867.466 kb on - strand, within CA265_RS03630 at 867.567 kb on - strand, within CA265_RS03630 at 867.628 kb on + strand, within CA265_RS03630 at 867.633 kb on + strand, within CA265_RS03630 at 867.662 kb on - strand, within CA265_RS03630 at 867.686 kb on - strand, within CA265_RS03630 at 867.833 kb on + strand, within CA265_RS03630 at 867.834 kb on - strand, within CA265_RS03630 at 867.853 kb on - strand, within CA265_RS03630 at 867.853 kb on - strand, within CA265_RS03630 at 867.921 kb on - strand, within CA265_RS03630 at 867.981 kb on - strand, within CA265_RS03630
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 865,044 + CA265_RS03615 0.66 -3.7 865,121 + CA265_RS03615 0.76 -3.2 865,143 + CA265_RS03615 0.79 -5.2 865,154 + CA265_RS03615 0.81 -2.9 865,154 + CA265_RS03615 0.81 -2.2 865,154 + CA265_RS03615 0.81 -3.9 865,154 + CA265_RS03615 0.81 -2.9 865,184 - CA265_RS03615 0.85 -1.5 865,216 + CA265_RS03615 0.89 -3.8 865,281 - -2.7 865,290 + -5.0 865,291 - -4.0 865,291 - -4.0 865,291 - -4.9 865,295 - -3.8 865,302 - -1.1 865,302 - -2.1 865,454 + CA265_RS03620 0.24 -2.7 865,461 + CA265_RS03620 0.25 -3.3 865,481 + CA265_RS03620 0.29 -2.1 865,482 - CA265_RS03620 0.29 -3.6 865,491 + CA265_RS03620 0.30 -2.8 865,494 + CA265_RS03620 0.31 -4.2 865,494 + CA265_RS03620 0.31 -3.3 865,513 + CA265_RS03620 0.34 -5.7 865,612 + CA265_RS03620 0.49 -3.9 865,807 + CA265_RS03620 0.80 -4.4 865,817 + CA265_RS03620 0.82 -3.5 865,837 + CA265_RS03620 0.85 -4.1 865,838 - CA265_RS03620 0.85 -2.8 865,942 + -3.4 865,944 + -3.9 865,954 - +0.2 866,001 - -0.6 866,134 + CA265_RS03625 0.12 -3.9 866,157 + CA265_RS03625 0.14 -0.9 866,178 - CA265_RS03625 0.16 -3.4 866,320 + CA265_RS03625 0.28 -2.1 866,333 - CA265_RS03625 0.29 -3.3 866,378 - CA265_RS03625 0.33 -4.6 866,398 - CA265_RS03625 0.35 -1.0 866,401 + CA265_RS03625 0.35 -2.5 866,401 + CA265_RS03625 0.35 -4.1 866,402 - CA265_RS03625 0.36 -1.1 866,420 - CA265_RS03625 0.37 -4.8 866,536 - CA265_RS03625 0.47 -2.8 866,601 + CA265_RS03625 0.53 -3.5 866,655 + CA265_RS03625 0.58 -3.1 866,780 + CA265_RS03625 0.69 -4.5 866,902 - CA265_RS03625 0.80 -3.8 866,993 + CA265_RS03625 0.88 -4.9 867,023 + -2.5 867,024 - -3.3 867,027 - -3.1 867,067 + -2.8 867,115 - -2.9 867,122 - -2.9 867,158 + -5.0 867,181 + -4.6 867,263 - CA265_RS03630 0.12 -3.3 867,363 - CA265_RS03630 0.22 -3.8 867,465 + CA265_RS03630 0.32 -2.8 867,465 + CA265_RS03630 0.32 -1.8 867,466 - CA265_RS03630 0.32 -2.5 867,567 - CA265_RS03630 0.42 -3.3 867,628 + CA265_RS03630 0.47 -3.5 867,633 + CA265_RS03630 0.48 -2.5 867,662 - CA265_RS03630 0.51 -3.0 867,686 - CA265_RS03630 0.53 -2.3 867,833 + CA265_RS03630 0.67 -3.0 867,834 - CA265_RS03630 0.67 -4.8 867,853 - CA265_RS03630 0.69 -0.3 867,853 - CA265_RS03630 0.69 -3.9 867,921 - CA265_RS03630 0.76 -2.7 867,981 - CA265_RS03630 0.81 -4.3
Or see this region's nucleotide sequence