Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03135

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03130 and CA265_RS03135 are separated by 793 nucleotidesCA265_RS03135 and CA265_RS03140 are separated by 279 nucleotidesCA265_RS03140 and CA265_RS03145 are separated by 67 nucleotides CA265_RS03130: CA265_RS03130 - 4-hydroxyphenylpyruvate dioxygenase, at 774,149 to 775,279 _RS03130 CA265_RS03135: CA265_RS03135 - homogentisate 1,2-dioxygenase, at 776,073 to 777,239 _RS03135 CA265_RS03140: CA265_RS03140 - hypothetical protein, at 777,519 to 777,974 _RS03140 CA265_RS03145: CA265_RS03145 - fumarylacetoacetate hydrolase, at 778,042 to 779,037 _RS03145 Position (kb) 776 777 778Strain fitness (log2 ratio) -3 -2 -1 0 1at 775.092 kb on + strand, within CA265_RS03130at 775.131 kb on + strand, within CA265_RS03130at 775.189 kb on + strandat 775.193 kb on + strandat 775.209 kb on + strandat 775.568 kb on - strandat 775.568 kb on - strandat 775.571 kb on + strandat 775.672 kb on + strandat 775.758 kb on + strandat 775.759 kb on - strandat 775.837 kb on + strandat 775.838 kb on - strandat 775.874 kb on + strandat 775.899 kb on - strandat 775.946 kb on + strandat 776.034 kb on - strandat 776.079 kb on + strandat 776.080 kb on - strandat 776.082 kb on - strandat 776.216 kb on + strand, within CA265_RS03135at 776.274 kb on + strand, within CA265_RS03135at 776.274 kb on + strand, within CA265_RS03135at 776.275 kb on - strand, within CA265_RS03135at 776.308 kb on + strand, within CA265_RS03135at 776.311 kb on + strand, within CA265_RS03135at 776.311 kb on + strand, within CA265_RS03135at 776.345 kb on + strand, within CA265_RS03135at 776.347 kb on + strand, within CA265_RS03135at 776.347 kb on + strand, within CA265_RS03135at 776.348 kb on - strand, within CA265_RS03135at 776.348 kb on - strand, within CA265_RS03135at 776.497 kb on + strand, within CA265_RS03135at 776.498 kb on - strand, within CA265_RS03135at 776.523 kb on + strand, within CA265_RS03135at 776.523 kb on + strand, within CA265_RS03135at 776.523 kb on + strand, within CA265_RS03135at 776.527 kb on + strand, within CA265_RS03135at 776.527 kb on + strand, within CA265_RS03135at 776.544 kb on - strand, within CA265_RS03135at 776.549 kb on - strand, within CA265_RS03135at 776.549 kb on - strand, within CA265_RS03135at 776.560 kb on + strand, within CA265_RS03135at 776.565 kb on + strand, within CA265_RS03135at 776.602 kb on + strand, within CA265_RS03135at 776.670 kb on + strand, within CA265_RS03135at 776.688 kb on + strand, within CA265_RS03135at 776.692 kb on + strand, within CA265_RS03135at 776.692 kb on + strand, within CA265_RS03135at 776.771 kb on - strand, within CA265_RS03135at 776.807 kb on - strand, within CA265_RS03135at 776.816 kb on + strand, within CA265_RS03135at 776.859 kb on + strand, within CA265_RS03135at 776.860 kb on - strand, within CA265_RS03135at 776.894 kb on - strand, within CA265_RS03135at 776.936 kb on + strand, within CA265_RS03135at 776.941 kb on - strand, within CA265_RS03135at 776.996 kb on + strand, within CA265_RS03135at 777.012 kb on + strand, within CA265_RS03135at 777.012 kb on + strand, within CA265_RS03135at 777.110 kb on - strand, within CA265_RS03135at 777.110 kb on - strand, within CA265_RS03135at 777.233 kb on + strandat 777.233 kb on + strandat 777.234 kb on - strandat 777.234 kb on - strandat 777.234 kb on - strandat 777.240 kb on - strandat 777.243 kb on + strandat 777.259 kb on + strandat 777.344 kb on + strandat 777.345 kb on - strandat 777.375 kb on + strandat 777.419 kb on - strandat 777.459 kb on + strandat 777.497 kb on + strandat 777.498 kb on - strandat 777.498 kb on - strandat 777.501 kb on + strandat 777.501 kb on + strandat 777.507 kb on - strandat 777.599 kb on + strand, within CA265_RS03140at 777.689 kb on + strand, within CA265_RS03140at 777.727 kb on - strand, within CA265_RS03140at 777.745 kb on + strand, within CA265_RS03140at 777.746 kb on - strand, within CA265_RS03140at 777.788 kb on - strand, within CA265_RS03140at 777.874 kb on + strand, within CA265_RS03140at 777.913 kb on + strand, within CA265_RS03140at 777.913 kb on + strand, within CA265_RS03140at 777.938 kb on - strandat 777.972 kb on + strandat 777.973 kb on - strandat 777.973 kb on - strandat 778.024 kb on + strandat 778.049 kb on + strandat 778.050 kb on - strandat 778.058 kb on - strandat 778.058 kb on - strandat 778.104 kb on + strandat 778.105 kb on - strandat 778.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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775,092 + CA265_RS03130 0.83 +0.6
775,131 + CA265_RS03130 0.87 +0.0
775,189 + +0.3
775,193 + -0.3
775,209 + -3.6
775,568 - +1.1
775,568 - -0.3
775,571 + +0.9
775,672 + +0.7
775,758 + +0.4
775,759 - +0.5
775,837 + -0.4
775,838 - -1.5
775,874 + +0.0
775,899 - -1.9
775,946 + +0.5
776,034 - -1.6
776,079 + -1.9
776,080 - +0.7
776,082 - -1.4
776,216 + CA265_RS03135 0.12 -0.6
776,274 + CA265_RS03135 0.17 -0.1
776,274 + CA265_RS03135 0.17 -0.3
776,275 - CA265_RS03135 0.17 -0.1
776,308 + CA265_RS03135 0.20 +0.1
776,311 + CA265_RS03135 0.20 -0.3
776,311 + CA265_RS03135 0.20 +0.5
776,345 + CA265_RS03135 0.23 -2.2
776,347 + CA265_RS03135 0.23 -0.6
776,347 + CA265_RS03135 0.23 +0.8
776,348 - CA265_RS03135 0.24 -0.7
776,348 - CA265_RS03135 0.24 +1.7
776,497 + CA265_RS03135 0.36 +0.4
776,498 - CA265_RS03135 0.36 -0.8
776,523 + CA265_RS03135 0.39 -0.3
776,523 + CA265_RS03135 0.39 -0.9
776,523 + CA265_RS03135 0.39 -0.3
776,527 + CA265_RS03135 0.39 -0.3
776,527 + CA265_RS03135 0.39 -0.6
776,544 - CA265_RS03135 0.40 -0.5
776,549 - CA265_RS03135 0.41 +0.4
776,549 - CA265_RS03135 0.41 +0.1
776,560 + CA265_RS03135 0.42 -0.3
776,565 + CA265_RS03135 0.42 -0.2
776,602 + CA265_RS03135 0.45 +0.4
776,670 + CA265_RS03135 0.51 +0.4
776,688 + CA265_RS03135 0.53 -0.3
776,692 + CA265_RS03135 0.53 -1.0
776,692 + CA265_RS03135 0.53 +1.3
776,771 - CA265_RS03135 0.60 +1.6
776,807 - CA265_RS03135 0.63 +0.1
776,816 + CA265_RS03135 0.64 -0.5
776,859 + CA265_RS03135 0.67 -0.1
776,860 - CA265_RS03135 0.67 +0.2
776,894 - CA265_RS03135 0.70 +0.3
776,936 + CA265_RS03135 0.74 -0.3
776,941 - CA265_RS03135 0.74 +0.6
776,996 + CA265_RS03135 0.79 -0.3
777,012 + CA265_RS03135 0.80 +0.5
777,012 + CA265_RS03135 0.80 +0.0
777,110 - CA265_RS03135 0.89 +0.5
777,110 - CA265_RS03135 0.89 -0.1
777,233 + -0.1
777,233 + +0.4
777,234 - -0.6
777,234 - +1.7
777,234 - -0.2
777,240 - +0.1
777,243 + +0.0
777,259 + -0.8
777,344 + +0.6
777,345 - -0.2
777,375 + -0.3
777,419 - +0.2
777,459 + +0.9
777,497 + -0.9
777,498 - +0.7
777,498 - +0.2
777,501 + -1.8
777,501 + -0.1
777,507 - -0.3
777,599 + CA265_RS03140 0.18 +0.3
777,689 + CA265_RS03140 0.37 -0.0
777,727 - CA265_RS03140 0.46 -0.1
777,745 + CA265_RS03140 0.50 +0.6
777,746 - CA265_RS03140 0.50 -0.2
777,788 - CA265_RS03140 0.59 +0.7
777,874 + CA265_RS03140 0.78 -1.1
777,913 + CA265_RS03140 0.86 +0.2
777,913 + CA265_RS03140 0.86 -0.4
777,938 - -0.2
777,972 + +0.6
777,973 - -0.4
777,973 - +0.3
778,024 + -0.3
778,049 + +1.1
778,050 - +0.6
778,058 - -0.6
778,058 - +0.1
778,104 + -0.4
778,105 - -0.0
778,134 + +0.7

Or see this region's nucleotide sequence