Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03125 and CA265_RS03130 are separated by 240 nucleotides CA265_RS03130 and CA265_RS03135 are separated by 793 nucleotides
CA265_RS03125: CA265_RS03125 - hypothetical protein, at 773,438 to 773,908
_RS03125
CA265_RS03130: CA265_RS03130 - 4-hydroxyphenylpyruvate dioxygenase, at 774,149 to 775,279
_RS03130
CA265_RS03135: CA265_RS03135 - homogentisate 1,2-dioxygenase, at 776,073 to 777,239
_RS03135
Position (kb) 774
775
776 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 773.236 kb on - strand at 773.254 kb on - strand at 773.293 kb on + strand at 773.336 kb on - strand at 773.405 kb on + strand at 773.430 kb on + strand at 773.451 kb on + strand at 773.452 kb on - strand at 773.634 kb on - strand, within CA265_RS03125 at 773.759 kb on - strand, within CA265_RS03125 at 773.927 kb on - strand at 773.937 kb on - strand at 774.004 kb on + strand at 774.080 kb on - strand at 774.086 kb on + strand at 774.195 kb on - strand at 774.235 kb on + strand at 774.299 kb on + strand, within CA265_RS03130 at 774.344 kb on + strand, within CA265_RS03130 at 774.347 kb on + strand, within CA265_RS03130 at 774.347 kb on + strand, within CA265_RS03130 at 774.348 kb on - strand, within CA265_RS03130 at 774.348 kb on - strand, within CA265_RS03130 at 774.391 kb on + strand, within CA265_RS03130 at 774.391 kb on + strand, within CA265_RS03130 at 774.392 kb on - strand, within CA265_RS03130 at 774.487 kb on + strand, within CA265_RS03130 at 774.487 kb on + strand, within CA265_RS03130 at 774.488 kb on - strand, within CA265_RS03130 at 774.510 kb on + strand, within CA265_RS03130 at 774.514 kb on - strand, within CA265_RS03130 at 774.522 kb on + strand, within CA265_RS03130 at 774.678 kb on - strand, within CA265_RS03130 at 774.723 kb on - strand, within CA265_RS03130 at 774.746 kb on - strand, within CA265_RS03130 at 774.746 kb on - strand, within CA265_RS03130 at 774.748 kb on - strand, within CA265_RS03130 at 774.749 kb on + strand, within CA265_RS03130 at 774.750 kb on - strand, within CA265_RS03130 at 774.817 kb on + strand, within CA265_RS03130 at 774.869 kb on - strand, within CA265_RS03130 at 774.964 kb on - strand, within CA265_RS03130 at 774.964 kb on - strand, within CA265_RS03130 at 774.975 kb on - strand, within CA265_RS03130 at 775.029 kb on - strand, within CA265_RS03130 at 775.046 kb on + strand, within CA265_RS03130 at 775.092 kb on + strand, within CA265_RS03130 at 775.131 kb on + strand, within CA265_RS03130 at 775.189 kb on + strand at 775.193 kb on + strand at 775.209 kb on + strand at 775.568 kb on - strand at 775.568 kb on - strand at 775.571 kb on + strand at 775.672 kb on + strand at 775.758 kb on + strand at 775.759 kb on - strand at 775.837 kb on + strand at 775.838 kb on - strand at 775.874 kb on + strand at 775.899 kb on - strand at 775.946 kb on + strand at 776.034 kb on - strand at 776.079 kb on + strand at 776.080 kb on - strand at 776.082 kb on - strand at 776.216 kb on + strand, within CA265_RS03135 at 776.274 kb on + strand, within CA265_RS03135 at 776.274 kb on + strand, within CA265_RS03135 at 776.275 kb on - strand, within CA265_RS03135
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 773,236 - -0.3 773,254 - -1.4 773,293 + +0.1 773,336 - -0.2 773,405 + -0.3 773,430 + +0.2 773,451 + -0.0 773,452 - +0.6 773,634 - CA265_RS03125 0.42 +0.0 773,759 - CA265_RS03125 0.68 -0.6 773,927 - -0.0 773,937 - +1.4 774,004 + -0.1 774,080 - +0.7 774,086 + +0.3 774,195 - +0.2 774,235 + +0.1 774,299 + CA265_RS03130 0.13 -0.6 774,344 + CA265_RS03130 0.17 +0.4 774,347 + CA265_RS03130 0.18 -0.5 774,347 + CA265_RS03130 0.18 +0.3 774,348 - CA265_RS03130 0.18 -0.1 774,348 - CA265_RS03130 0.18 +0.3 774,391 + CA265_RS03130 0.21 -0.6 774,391 + CA265_RS03130 0.21 +0.9 774,392 - CA265_RS03130 0.21 +0.3 774,487 + CA265_RS03130 0.30 +0.3 774,487 + CA265_RS03130 0.30 +0.2 774,488 - CA265_RS03130 0.30 -0.1 774,510 + CA265_RS03130 0.32 +0.5 774,514 - CA265_RS03130 0.32 +0.1 774,522 + CA265_RS03130 0.33 -2.5 774,678 - CA265_RS03130 0.47 +0.4 774,723 - CA265_RS03130 0.51 -1.1 774,746 - CA265_RS03130 0.53 -0.9 774,746 - CA265_RS03130 0.53 -2.0 774,748 - CA265_RS03130 0.53 +0.1 774,749 + CA265_RS03130 0.53 -0.9 774,750 - CA265_RS03130 0.53 +1.4 774,817 + CA265_RS03130 0.59 -1.2 774,869 - CA265_RS03130 0.64 +0.6 774,964 - CA265_RS03130 0.72 +0.6 774,964 - CA265_RS03130 0.72 +0.9 774,975 - CA265_RS03130 0.73 +0.0 775,029 - CA265_RS03130 0.78 +0.4 775,046 + CA265_RS03130 0.79 +0.2 775,092 + CA265_RS03130 0.83 +0.6 775,131 + CA265_RS03130 0.87 +0.0 775,189 + +0.3 775,193 + -0.3 775,209 + -3.6 775,568 - +1.1 775,568 - -0.3 775,571 + +0.9 775,672 + +0.7 775,758 + +0.4 775,759 - +0.5 775,837 + -0.4 775,838 - -1.5 775,874 + +0.0 775,899 - -1.9 775,946 + +0.5 776,034 - -1.6 776,079 + -1.9 776,080 - +0.7 776,082 - -1.4 776,216 + CA265_RS03135 0.12 -0.6 776,274 + CA265_RS03135 0.17 -0.1 776,274 + CA265_RS03135 0.17 -0.3 776,275 - CA265_RS03135 0.17 -0.1
Or see this region's nucleotide sequence