Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02935

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02925 and CA265_RS02930 are separated by 113 nucleotidesCA265_RS02930 and CA265_RS02935 overlap by 4 nucleotidesCA265_RS02935 and CA265_RS02940 are separated by 78 nucleotides CA265_RS02925: CA265_RS02925 - sulfatase, at 729,145 to 730,746 _RS02925 CA265_RS02930: CA265_RS02930 - beta-glucanase, at 730,860 to 731,648 _RS02930 CA265_RS02935: CA265_RS02935 - hypothetical protein, at 731,645 to 733,684 _RS02935 CA265_RS02940: CA265_RS02940 - alpha-1,3/4-fucosidase, at 733,763 to 735,997 _RS02940 Position (kb) 731 732 733 734Strain fitness (log2 ratio) -2 -1 0 1at 730.781 kb on + strandat 730.803 kb on + strandat 730.870 kb on + strandat 730.871 kb on - strandat 730.883 kb on - strandat 730.885 kb on + strandat 730.899 kb on + strandat 730.916 kb on + strandat 730.917 kb on - strandat 731.136 kb on - strand, within CA265_RS02930at 731.151 kb on - strand, within CA265_RS02930at 731.195 kb on - strand, within CA265_RS02930at 731.276 kb on + strand, within CA265_RS02930at 731.303 kb on - strand, within CA265_RS02930at 731.325 kb on + strand, within CA265_RS02930at 731.406 kb on + strand, within CA265_RS02930at 731.465 kb on + strand, within CA265_RS02930at 731.479 kb on + strand, within CA265_RS02930at 731.536 kb on + strand, within CA265_RS02930at 731.556 kb on - strand, within CA265_RS02930at 731.572 kb on + strandat 731.668 kb on + strandat 731.675 kb on - strandat 731.687 kb on + strandat 731.698 kb on - strandat 731.731 kb on + strandat 731.862 kb on + strand, within CA265_RS02935at 732.031 kb on + strand, within CA265_RS02935at 732.042 kb on - strand, within CA265_RS02935at 732.069 kb on + strand, within CA265_RS02935at 732.100 kb on - strand, within CA265_RS02935at 732.116 kb on - strand, within CA265_RS02935at 732.116 kb on - strand, within CA265_RS02935at 732.149 kb on - strand, within CA265_RS02935at 732.178 kb on + strand, within CA265_RS02935at 732.179 kb on - strand, within CA265_RS02935at 732.179 kb on - strand, within CA265_RS02935at 732.190 kb on - strand, within CA265_RS02935at 732.224 kb on + strand, within CA265_RS02935at 732.224 kb on + strand, within CA265_RS02935at 732.225 kb on - strand, within CA265_RS02935at 732.254 kb on - strand, within CA265_RS02935at 732.337 kb on + strand, within CA265_RS02935at 732.338 kb on - strand, within CA265_RS02935at 732.338 kb on - strand, within CA265_RS02935at 732.415 kb on + strand, within CA265_RS02935at 732.416 kb on - strand, within CA265_RS02935at 732.416 kb on - strand, within CA265_RS02935at 732.457 kb on + strand, within CA265_RS02935at 732.478 kb on + strand, within CA265_RS02935at 732.499 kb on - strand, within CA265_RS02935at 732.546 kb on + strand, within CA265_RS02935at 732.547 kb on - strand, within CA265_RS02935at 732.550 kb on + strand, within CA265_RS02935at 732.572 kb on - strand, within CA265_RS02935at 732.592 kb on + strand, within CA265_RS02935at 732.636 kb on + strand, within CA265_RS02935at 732.636 kb on + strand, within CA265_RS02935at 732.679 kb on - strand, within CA265_RS02935at 732.730 kb on + strand, within CA265_RS02935at 732.731 kb on - strand, within CA265_RS02935at 732.750 kb on - strand, within CA265_RS02935at 732.750 kb on - strand, within CA265_RS02935at 732.781 kb on + strand, within CA265_RS02935at 732.839 kb on + strand, within CA265_RS02935at 732.847 kb on - strand, within CA265_RS02935at 732.890 kb on - strand, within CA265_RS02935at 732.973 kb on + strand, within CA265_RS02935at 732.983 kb on + strand, within CA265_RS02935at 733.095 kb on - strand, within CA265_RS02935at 733.100 kb on - strand, within CA265_RS02935at 733.125 kb on + strand, within CA265_RS02935at 733.215 kb on + strand, within CA265_RS02935at 733.238 kb on - strand, within CA265_RS02935at 733.339 kb on + strand, within CA265_RS02935at 733.392 kb on - strand, within CA265_RS02935at 733.394 kb on - strand, within CA265_RS02935at 733.541 kb on - strandat 733.556 kb on - strandat 733.567 kb on - strandat 733.621 kb on + strandat 733.645 kb on + strandat 733.689 kb on - strandat 733.689 kb on - strandat 733.690 kb on + strandat 733.691 kb on - strandat 733.711 kb on + strandat 733.712 kb on - strandat 733.712 kb on - strandat 733.712 kb on - strandat 733.818 kb on + strandat 733.819 kb on - strandat 733.850 kb on - strandat 733.850 kb on - strandat 733.855 kb on - strandat 733.960 kb on + strandat 734.035 kb on - strand, within CA265_RS02940at 734.035 kb on - strand, within CA265_RS02940at 734.106 kb on + strand, within CA265_RS02940at 734.127 kb on + strand, within CA265_RS02940at 734.245 kb on + strand, within CA265_RS02940at 734.250 kb on - strand, within CA265_RS02940at 734.271 kb on - strand, within CA265_RS02940at 734.316 kb on + strand, within CA265_RS02940at 734.372 kb on - strand, within CA265_RS02940at 734.396 kb on + strand, within CA265_RS02940at 734.505 kb on - strand, within CA265_RS02940at 734.506 kb on + strand, within CA265_RS02940at 734.507 kb on - strand, within CA265_RS02940at 734.536 kb on + strand, within CA265_RS02940at 734.675 kb on - strand, within CA265_RS02940at 734.683 kb on + strand, within CA265_RS02940

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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730,781 + -1.5
730,803 + -1.5
730,870 + -0.5
730,871 - -0.7
730,883 - +0.4
730,885 + +0.3
730,899 + -0.4
730,916 + +0.1
730,917 - +0.9
731,136 - CA265_RS02930 0.35 +0.7
731,151 - CA265_RS02930 0.37 -0.3
731,195 - CA265_RS02930 0.42 -0.6
731,276 + CA265_RS02930 0.53 -0.3
731,303 - CA265_RS02930 0.56 -0.3
731,325 + CA265_RS02930 0.59 -0.7
731,406 + CA265_RS02930 0.69 +1.0
731,465 + CA265_RS02930 0.77 +0.1
731,479 + CA265_RS02930 0.78 -0.3
731,536 + CA265_RS02930 0.86 -0.5
731,556 - CA265_RS02930 0.88 +0.0
731,572 + +0.0
731,668 + -1.1
731,675 - +0.6
731,687 + +0.0
731,698 - -1.4
731,731 + -0.6
731,862 + CA265_RS02935 0.11 +0.0
732,031 + CA265_RS02935 0.19 +0.8
732,042 - CA265_RS02935 0.19 -0.3
732,069 + CA265_RS02935 0.21 +0.1
732,100 - CA265_RS02935 0.22 +1.5
732,116 - CA265_RS02935 0.23 -0.2
732,116 - CA265_RS02935 0.23 +1.0
732,149 - CA265_RS02935 0.25 -0.2
732,178 + CA265_RS02935 0.26 +0.4
732,179 - CA265_RS02935 0.26 +0.5
732,179 - CA265_RS02935 0.26 +0.2
732,190 - CA265_RS02935 0.27 -0.3
732,224 + CA265_RS02935 0.28 -1.3
732,224 + CA265_RS02935 0.28 -0.9
732,225 - CA265_RS02935 0.28 +0.5
732,254 - CA265_RS02935 0.30 +0.7
732,337 + CA265_RS02935 0.34 -0.3
732,338 - CA265_RS02935 0.34 -0.4
732,338 - CA265_RS02935 0.34 -0.5
732,415 + CA265_RS02935 0.38 -0.8
732,416 - CA265_RS02935 0.38 +0.3
732,416 - CA265_RS02935 0.38 +0.1
732,457 + CA265_RS02935 0.40 +0.3
732,478 + CA265_RS02935 0.41 +0.3
732,499 - CA265_RS02935 0.42 +0.5
732,546 + CA265_RS02935 0.44 +0.3
732,547 - CA265_RS02935 0.44 -1.3
732,550 + CA265_RS02935 0.44 -0.0
732,572 - CA265_RS02935 0.45 -1.0
732,592 + CA265_RS02935 0.46 +0.4
732,636 + CA265_RS02935 0.49 +0.6
732,636 + CA265_RS02935 0.49 +0.2
732,679 - CA265_RS02935 0.51 +0.3
732,730 + CA265_RS02935 0.53 -0.7
732,731 - CA265_RS02935 0.53 +0.3
732,750 - CA265_RS02935 0.54 -0.2
732,750 - CA265_RS02935 0.54 +0.4
732,781 + CA265_RS02935 0.56 -0.4
732,839 + CA265_RS02935 0.59 -1.3
732,847 - CA265_RS02935 0.59 -0.0
732,890 - CA265_RS02935 0.61 +0.4
732,973 + CA265_RS02935 0.65 +0.3
732,983 + CA265_RS02935 0.66 -0.4
733,095 - CA265_RS02935 0.71 -0.5
733,100 - CA265_RS02935 0.71 -0.2
733,125 + CA265_RS02935 0.73 -1.2
733,215 + CA265_RS02935 0.77 +0.3
733,238 - CA265_RS02935 0.78 +0.6
733,339 + CA265_RS02935 0.83 +0.4
733,392 - CA265_RS02935 0.86 -0.7
733,394 - CA265_RS02935 0.86 -0.5
733,541 - +0.0
733,556 - -0.6
733,567 - +0.1
733,621 + +0.1
733,645 + +1.3
733,689 - +1.1
733,689 - +1.2
733,690 + +0.1
733,691 - +0.4
733,711 + -0.8
733,712 - +0.7
733,712 - -0.5
733,712 - +0.0
733,818 + +0.0
733,819 - +0.3
733,850 - +0.3
733,850 - -0.3
733,855 - -0.3
733,960 + -0.1
734,035 - CA265_RS02940 0.12 -0.7
734,035 - CA265_RS02940 0.12 -0.2
734,106 + CA265_RS02940 0.15 +0.6
734,127 + CA265_RS02940 0.16 +0.2
734,245 + CA265_RS02940 0.22 +0.4
734,250 - CA265_RS02940 0.22 -2.4
734,271 - CA265_RS02940 0.23 +0.7
734,316 + CA265_RS02940 0.25 -0.3
734,372 - CA265_RS02940 0.27 -0.5
734,396 + CA265_RS02940 0.28 +0.4
734,505 - CA265_RS02940 0.33 -0.1
734,506 + CA265_RS02940 0.33 +0.1
734,507 - CA265_RS02940 0.33 -0.1
734,536 + CA265_RS02940 0.35 -0.5
734,675 - CA265_RS02940 0.41 +0.6
734,683 + CA265_RS02940 0.41 -0.5

Or see this region's nucleotide sequence