Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01265

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01255 and CA265_RS01260 are separated by 152 nucleotidesCA265_RS01260 and CA265_RS01265 are separated by 173 nucleotidesCA265_RS01265 and CA265_RS01270 are separated by 2 nucleotides CA265_RS01255: CA265_RS01255 - hypothetical protein, at 310,763 to 311,734 _RS01255 CA265_RS01260: CA265_RS01260 - hypothetical protein, at 311,887 to 312,243 _RS01260 CA265_RS01265: CA265_RS01265 - GntR family transcriptional regulator, at 312,417 to 313,157 _RS01265 CA265_RS01270: CA265_RS01270 - hypothetical protein, at 313,160 to 315,838 _RS01270 Position (kb) 312 313 314Strain fitness (log2 ratio) -1 0 1 2 3at 311.425 kb on - strand, within CA265_RS01255at 311.525 kb on - strand, within CA265_RS01255at 311.621 kb on - strand, within CA265_RS01255at 311.621 kb on - strand, within CA265_RS01255at 311.622 kb on + strand, within CA265_RS01255at 311.623 kb on - strand, within CA265_RS01255at 311.672 kb on + strandat 311.673 kb on - strandat 311.676 kb on + strandat 311.677 kb on - strandat 311.684 kb on - strandat 311.687 kb on - strandat 311.738 kb on - strandat 311.815 kb on - strandat 311.881 kb on - strandat 312.016 kb on + strand, within CA265_RS01260at 312.017 kb on - strand, within CA265_RS01260at 312.049 kb on - strand, within CA265_RS01260at 312.062 kb on + strand, within CA265_RS01260at 312.063 kb on - strand, within CA265_RS01260at 312.085 kb on - strand, within CA265_RS01260at 312.195 kb on - strand, within CA265_RS01260at 312.195 kb on - strand, within CA265_RS01260at 312.197 kb on - strand, within CA265_RS01260at 312.242 kb on - strandat 312.249 kb on + strandat 312.249 kb on + strandat 312.261 kb on + strandat 312.266 kb on - strandat 312.321 kb on - strandat 312.330 kb on - strandat 312.339 kb on - strandat 312.353 kb on - strandat 312.361 kb on + strandat 312.384 kb on - strandat 312.391 kb on + strandat 312.393 kb on + strandat 312.449 kb on + strandat 312.449 kb on + strandat 312.713 kb on + strand, within CA265_RS01265at 312.775 kb on + strand, within CA265_RS01265at 312.811 kb on + strand, within CA265_RS01265at 312.924 kb on + strand, within CA265_RS01265at 312.932 kb on - strand, within CA265_RS01265at 312.950 kb on + strand, within CA265_RS01265at 312.963 kb on + strand, within CA265_RS01265at 312.964 kb on - strand, within CA265_RS01265at 312.979 kb on + strand, within CA265_RS01265at 313.036 kb on + strand, within CA265_RS01265at 313.092 kb on + strandat 313.092 kb on + strandat 313.098 kb on - strandat 313.128 kb on + strandat 313.128 kb on + strandat 313.129 kb on - strandat 313.155 kb on + strandat 313.212 kb on + strandat 313.227 kb on + strandat 313.232 kb on - strandat 313.232 kb on - strandat 313.302 kb on + strandat 313.303 kb on - strandat 313.391 kb on - strandat 313.444 kb on + strand, within CA265_RS01270at 313.444 kb on + strand, within CA265_RS01270at 313.444 kb on + strand, within CA265_RS01270at 313.445 kb on - strand, within CA265_RS01270at 313.481 kb on + strandat 313.481 kb on + strand, within CA265_RS01270at 313.484 kb on - strand, within CA265_RS01270at 313.570 kb on + strand, within CA265_RS01270at 313.618 kb on + strand, within CA265_RS01270at 313.619 kb on - strand, within CA265_RS01270at 313.692 kb on + strand, within CA265_RS01270at 313.712 kb on + strand, within CA265_RS01270at 313.752 kb on + strand, within CA265_RS01270at 313.752 kb on + strand, within CA265_RS01270at 313.753 kb on - strand, within CA265_RS01270at 313.855 kb on - strand, within CA265_RS01270at 313.859 kb on - strand, within CA265_RS01270at 313.933 kb on + strand, within CA265_RS01270at 313.954 kb on - strand, within CA265_RS01270at 313.954 kb on - strand, within CA265_RS01270at 313.966 kb on + strand, within CA265_RS01270at 314.008 kb on + strand, within CA265_RS01270at 314.030 kb on - strand, within CA265_RS01270at 314.063 kb on - strandat 314.110 kb on - strand, within CA265_RS01270

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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311,425 - CA265_RS01255 0.68 +0.4
311,525 - CA265_RS01255 0.78 -1.6
311,621 - CA265_RS01255 0.88 -1.5
311,621 - CA265_RS01255 0.88 +0.3
311,622 + CA265_RS01255 0.88 -0.0
311,623 - CA265_RS01255 0.88 +0.3
311,672 + +0.3
311,673 - -1.3
311,676 + +0.1
311,677 - -1.1
311,684 - +0.2
311,687 - +0.2
311,738 - +0.8
311,815 - +0.1
311,881 - +0.1
312,016 + CA265_RS01260 0.36 +0.9
312,017 - CA265_RS01260 0.36 +0.5
312,049 - CA265_RS01260 0.45 -0.1
312,062 + CA265_RS01260 0.49 +0.2
312,063 - CA265_RS01260 0.49 -0.4
312,085 - CA265_RS01260 0.55 +0.5
312,195 - CA265_RS01260 0.86 -0.3
312,195 - CA265_RS01260 0.86 +0.6
312,197 - CA265_RS01260 0.87 +0.7
312,242 - -0.3
312,249 + +1.2
312,249 + +1.1
312,261 + +0.5
312,266 - -0.6
312,321 - +0.0
312,330 - +0.4
312,339 - -0.3
312,353 - -0.9
312,361 + +1.2
312,384 - -1.7
312,391 + +0.7
312,393 + +2.0
312,449 + +1.5
312,449 + +1.5
312,713 + CA265_RS01265 0.40 +1.5
312,775 + CA265_RS01265 0.48 +1.9
312,811 + CA265_RS01265 0.53 +1.6
312,924 + CA265_RS01265 0.68 +1.3
312,932 - CA265_RS01265 0.70 +0.6
312,950 + CA265_RS01265 0.72 +1.4
312,963 + CA265_RS01265 0.74 +1.5
312,964 - CA265_RS01265 0.74 +0.6
312,979 + CA265_RS01265 0.76 +1.7
313,036 + CA265_RS01265 0.84 +0.7
313,092 + +1.5
313,092 + +1.4
313,098 - -0.3
313,128 + +0.5
313,128 + +1.9
313,129 - +2.3
313,155 + +1.2
313,212 + +1.7
313,227 + +1.3
313,232 - +0.6
313,232 - -0.7
313,302 + +1.1
313,303 - +1.0
313,391 - -0.1
313,444 + CA265_RS01270 0.11 +1.4
313,444 + CA265_RS01270 0.11 +1.7
313,444 + CA265_RS01270 0.11 +1.6
313,445 - CA265_RS01270 0.11 -0.6
313,481 + +3.3
313,481 + CA265_RS01270 0.12 +0.6
313,484 - CA265_RS01270 0.12 +2.7
313,570 + CA265_RS01270 0.15 +1.7
313,618 + CA265_RS01270 0.17 +0.6
313,619 - CA265_RS01270 0.17 -1.1
313,692 + CA265_RS01270 0.20 +1.2
313,712 + CA265_RS01270 0.21 +2.6
313,752 + CA265_RS01270 0.22 +2.0
313,752 + CA265_RS01270 0.22 +1.3
313,753 - CA265_RS01270 0.22 +0.6
313,855 - CA265_RS01270 0.26 -0.5
313,859 - CA265_RS01270 0.26 +0.1
313,933 + CA265_RS01270 0.29 +1.4
313,954 - CA265_RS01270 0.30 -0.2
313,954 - CA265_RS01270 0.30 -0.7
313,966 + CA265_RS01270 0.30 +1.3
314,008 + CA265_RS01270 0.32 +1.9
314,030 - CA265_RS01270 0.32 +0.1
314,063 - -1.4
314,110 - CA265_RS01270 0.35 +0.3

Or see this region's nucleotide sequence