Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00875 and CA265_RS00880 are separated by 18 nucleotides CA265_RS00880 and CA265_RS00885 overlap by 1 nucleotides CA265_RS00885 and CA265_RS00890 are separated by 85 nucleotides
CA265_RS00875: CA265_RS00875 - alkaline phosphatase, at 211,349 to 212,317
_RS00875
CA265_RS00880: CA265_RS00880 - hypothetical protein, at 212,336 to 213,265
_RS00880
CA265_RS00885: CA265_RS00885 - hypothetical protein, at 213,265 to 214,017
_RS00885
CA265_RS00890: CA265_RS00890 - LacI family transcriptional regulator, at 214,103 to 215,125
_RS00890
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 212.270 kb on + strand at 212.271 kb on - strand at 212.271 kb on - strand at 212.274 kb on + strand at 212.275 kb on - strand at 212.292 kb on - strand at 212.316 kb on - strand at 212.325 kb on + strand at 212.372 kb on - strand at 212.507 kb on - strand, within CA265_RS00880 at 212.541 kb on + strand, within CA265_RS00880 at 212.573 kb on + strand, within CA265_RS00880 at 212.574 kb on - strand, within CA265_RS00880 at 212.740 kb on - strand, within CA265_RS00880 at 212.743 kb on - strand, within CA265_RS00880 at 212.743 kb on - strand, within CA265_RS00880 at 212.743 kb on - strand, within CA265_RS00880 at 212.769 kb on - strand, within CA265_RS00880 at 212.774 kb on - strand, within CA265_RS00880 at 212.774 kb on - strand, within CA265_RS00880 at 212.800 kb on + strand, within CA265_RS00880 at 212.815 kb on + strand, within CA265_RS00880 at 212.903 kb on - strand, within CA265_RS00880 at 212.908 kb on - strand, within CA265_RS00880 at 212.908 kb on - strand, within CA265_RS00880 at 212.950 kb on - strand, within CA265_RS00880 at 213.013 kb on + strand, within CA265_RS00880 at 213.044 kb on - strand, within CA265_RS00880 at 213.063 kb on + strand, within CA265_RS00880 at 213.064 kb on - strand, within CA265_RS00880 at 213.098 kb on + strand, within CA265_RS00880 at 213.117 kb on + strand, within CA265_RS00880 at 213.117 kb on + strand, within CA265_RS00880 at 213.118 kb on - strand, within CA265_RS00880 at 213.121 kb on + strand, within CA265_RS00880 at 213.121 kb on + strand, within CA265_RS00880 at 213.178 kb on + strand at 213.242 kb on + strand at 213.243 kb on - strand at 213.247 kb on - strand at 213.280 kb on - strand at 213.343 kb on + strand, within CA265_RS00885 at 213.343 kb on + strand, within CA265_RS00885 at 213.344 kb on - strand, within CA265_RS00885 at 213.422 kb on + strand, within CA265_RS00885 at 213.476 kb on - strand, within CA265_RS00885 at 213.476 kb on - strand, within CA265_RS00885 at 213.485 kb on + strand, within CA265_RS00885 at 213.486 kb on - strand, within CA265_RS00885 at 213.556 kb on - strand, within CA265_RS00885 at 213.610 kb on + strand, within CA265_RS00885 at 213.610 kb on + strand, within CA265_RS00885 at 213.610 kb on + strand, within CA265_RS00885 at 213.684 kb on - strand, within CA265_RS00885 at 213.794 kb on + strand, within CA265_RS00885 at 213.844 kb on - strand, within CA265_RS00885 at 213.905 kb on - strand, within CA265_RS00885 at 213.916 kb on + strand, within CA265_RS00885 at 213.917 kb on - strand, within CA265_RS00885 at 213.917 kb on - strand, within CA265_RS00885 at 213.932 kb on + strand, within CA265_RS00885 at 213.954 kb on + strand at 213.954 kb on + strand at 213.955 kb on - strand at 213.968 kb on + strand at 213.978 kb on + strand at 214.025 kb on + strand at 214.029 kb on + strand at 214.030 kb on + strand at 214.094 kb on + strand at 214.156 kb on + strand at 214.157 kb on - strand at 214.378 kb on + strand, within CA265_RS00890 at 214.382 kb on + strand, within CA265_RS00890 at 214.383 kb on - strand, within CA265_RS00890 at 214.428 kb on + strand, within CA265_RS00890 at 214.588 kb on - strand, within CA265_RS00890 at 214.595 kb on - strand, within CA265_RS00890 at 214.656 kb on + strand, within CA265_RS00890 at 214.714 kb on + strand, within CA265_RS00890 at 214.715 kb on - strand, within CA265_RS00890 at 214.715 kb on - strand, within CA265_RS00890 at 214.853 kb on - strand, within CA265_RS00890 at 214.860 kb on - strand, within CA265_RS00890 at 214.871 kb on + strand, within CA265_RS00890 at 214.872 kb on - strand, within CA265_RS00890 at 214.968 kb on - strand, within CA265_RS00890
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 212,270 + -0.1 212,271 - -0.0 212,271 - -0.4 212,274 + +0.4 212,275 - +0.1 212,292 - -0.2 212,316 - +2.0 212,325 + +1.0 212,372 - -1.2 212,507 - CA265_RS00880 0.18 +0.4 212,541 + CA265_RS00880 0.22 +0.4 212,573 + CA265_RS00880 0.25 +0.6 212,574 - CA265_RS00880 0.26 -0.1 212,740 - CA265_RS00880 0.43 -0.0 212,743 - CA265_RS00880 0.44 -0.4 212,743 - CA265_RS00880 0.44 +0.5 212,743 - CA265_RS00880 0.44 +0.1 212,769 - CA265_RS00880 0.47 +0.0 212,774 - CA265_RS00880 0.47 +0.0 212,774 - CA265_RS00880 0.47 +1.1 212,800 + CA265_RS00880 0.50 +0.2 212,815 + CA265_RS00880 0.52 +2.2 212,903 - CA265_RS00880 0.61 +0.8 212,908 - CA265_RS00880 0.62 +0.9 212,908 - CA265_RS00880 0.62 +0.6 212,950 - CA265_RS00880 0.66 +0.8 213,013 + CA265_RS00880 0.73 +0.5 213,044 - CA265_RS00880 0.76 +0.8 213,063 + CA265_RS00880 0.78 +0.9 213,064 - CA265_RS00880 0.78 +0.4 213,098 + CA265_RS00880 0.82 +1.2 213,117 + CA265_RS00880 0.84 +0.8 213,117 + CA265_RS00880 0.84 -0.9 213,118 - CA265_RS00880 0.84 +0.1 213,121 + CA265_RS00880 0.84 +0.8 213,121 + CA265_RS00880 0.84 +0.8 213,178 + +1.3 213,242 + +0.1 213,243 - +1.9 213,247 - +0.5 213,280 - -0.4 213,343 + CA265_RS00885 0.10 -1.4 213,343 + CA265_RS00885 0.10 +0.8 213,344 - CA265_RS00885 0.10 +0.2 213,422 + CA265_RS00885 0.21 +0.7 213,476 - CA265_RS00885 0.28 +0.6 213,476 - CA265_RS00885 0.28 +0.1 213,485 + CA265_RS00885 0.29 +1.1 213,486 - CA265_RS00885 0.29 -0.1 213,556 - CA265_RS00885 0.39 +1.6 213,610 + CA265_RS00885 0.46 -3.2 213,610 + CA265_RS00885 0.46 -0.3 213,610 + CA265_RS00885 0.46 +0.4 213,684 - CA265_RS00885 0.56 -0.1 213,794 + CA265_RS00885 0.70 +0.1 213,844 - CA265_RS00885 0.77 +0.7 213,905 - CA265_RS00885 0.85 +0.0 213,916 + CA265_RS00885 0.86 -0.3 213,917 - CA265_RS00885 0.87 +1.1 213,917 - CA265_RS00885 0.87 +0.1 213,932 + CA265_RS00885 0.89 +0.3 213,954 + -0.1 213,954 + -0.9 213,955 - +0.7 213,968 + +0.3 213,978 + -0.4 214,025 + +0.7 214,029 + +0.1 214,030 + +0.8 214,094 + +0.2 214,156 + +0.1 214,157 - +0.3 214,378 + CA265_RS00890 0.27 -1.8 214,382 + CA265_RS00890 0.27 -0.2 214,383 - CA265_RS00890 0.27 +0.1 214,428 + CA265_RS00890 0.32 +0.2 214,588 - CA265_RS00890 0.47 +0.7 214,595 - CA265_RS00890 0.48 -2.2 214,656 + CA265_RS00890 0.54 -1.4 214,714 + CA265_RS00890 0.60 +0.3 214,715 - CA265_RS00890 0.60 -0.8 214,715 - CA265_RS00890 0.60 -0.3 214,853 - CA265_RS00890 0.73 +0.8 214,860 - CA265_RS00890 0.74 +0.4 214,871 + CA265_RS00890 0.75 -0.2 214,872 - CA265_RS00890 0.75 +0.5 214,968 - CA265_RS00890 0.85 -1.7
Or see this region's nucleotide sequence