Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34450 and BPHYT_RS34455 are separated by 143 nucleotides BPHYT_RS34455 and BPHYT_RS34460 overlap by 4 nucleotides BPHYT_RS34460 and BPHYT_RS34465 are separated by 1 nucleotides BPHYT_RS34465 and BPHYT_RS34470 are separated by 51 nucleotides
BPHYT_RS34450: BPHYT_RS34450 - LysR family transcriptional regulator, at 3,337,711 to 3,338,661
_RS34450
BPHYT_RS34455: BPHYT_RS34455 - arginine ABC transporter ATP-binding protein, at 3,338,805 to 3,339,530
_RS34455
BPHYT_RS34460: BPHYT_RS34460 - glutamate/aspartate transporter permease GltK, at 3,339,527 to 3,340,204
_RS34460
BPHYT_RS34465: BPHYT_RS34465 - glutamate/aspartate ABC transporter permease GltJ, at 3,340,206 to 3,340,943
_RS34465
BPHYT_RS34470: BPHYT_RS34470 - ABC transporter, at 3,340,995 to 3,341,852
_RS34470
Position (kb) 3339
3340
3341 Strain fitness (log2 ratio) -1
0
1 at 3338.534 kb on - strand, within BPHYT_RS34450 at 3338.554 kb on - strand, within BPHYT_RS34450 at 3339.500 kb on - strand at 3339.507 kb on - strand at 3339.688 kb on - strand, within BPHYT_RS34460 at 3339.774 kb on + strand, within BPHYT_RS34460 at 3339.775 kb on - strand, within BPHYT_RS34460 at 3340.029 kb on + strand, within BPHYT_RS34460 at 3340.287 kb on - strand, within BPHYT_RS34465 at 3340.288 kb on + strand, within BPHYT_RS34465 at 3340.288 kb on + strand, within BPHYT_RS34465 at 3340.289 kb on - strand, within BPHYT_RS34465 at 3340.289 kb on - strand, within BPHYT_RS34465 at 3340.471 kb on + strand, within BPHYT_RS34465 at 3340.569 kb on - strand, within BPHYT_RS34465 at 3340.582 kb on + strand, within BPHYT_RS34465 at 3340.582 kb on + strand, within BPHYT_RS34465 at 3340.583 kb on - strand, within BPHYT_RS34465 at 3340.823 kb on - strand, within BPHYT_RS34465 at 3340.898 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,338,534 - BPHYT_RS34450 0.87 +0.1 3,338,554 - BPHYT_RS34450 0.89 +1.0 3,339,500 - +0.5 3,339,507 - -0.1 3,339,688 - BPHYT_RS34460 0.24 +0.5 3,339,774 + BPHYT_RS34460 0.36 +1.2 3,339,775 - BPHYT_RS34460 0.37 +0.3 3,340,029 + BPHYT_RS34460 0.74 +0.3 3,340,287 - BPHYT_RS34465 0.11 +1.4 3,340,288 + BPHYT_RS34465 0.11 -0.2 3,340,288 + BPHYT_RS34465 0.11 -0.1 3,340,289 - BPHYT_RS34465 0.11 +0.2 3,340,289 - BPHYT_RS34465 0.11 +0.6 3,340,471 + BPHYT_RS34465 0.36 +0.2 3,340,569 - BPHYT_RS34465 0.49 -0.1 3,340,582 + BPHYT_RS34465 0.51 -1.5 3,340,582 + BPHYT_RS34465 0.51 -1.7 3,340,583 - BPHYT_RS34465 0.51 +1.3 3,340,823 - BPHYT_RS34465 0.84 -0.1 3,340,898 + +1.1
Or see this region's nucleotide sequence