Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31805

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31800 and BPHYT_RS31805 are separated by 48 nucleotidesBPHYT_RS31805 and BPHYT_RS31810 are separated by 358 nucleotides BPHYT_RS31800: BPHYT_RS31800 - NmrA family transcriptional regulator, at 2,692,930 to 2,693,796 _RS31800 BPHYT_RS31805: BPHYT_RS31805 - beta-lactamase, at 2,693,845 to 2,695,158 _RS31805 BPHYT_RS31810: BPHYT_RS31810 - LysR family transcriptional regulator, at 2,695,517 to 2,696,431 _RS31810 Position (kb) 2693 2694 2695 2696Strain fitness (log2 ratio) -2 -1 0 1at 2692.901 kb on + strandat 2693.793 kb on - strandat 2693.817 kb on + strandat 2693.817 kb on + strandat 2693.817 kb on + strandat 2693.825 kb on + strandat 2694.443 kb on + strand, within BPHYT_RS31805at 2694.443 kb on + strand, within BPHYT_RS31805at 2694.917 kb on + strand, within BPHYT_RS31805at 2695.009 kb on - strand, within BPHYT_RS31805at 2695.039 kb on - strandat 2695.317 kb on + strandat 2695.337 kb on + strandat 2695.378 kb on + strandat 2695.406 kb on + strandat 2696.095 kb on - strand, within BPHYT_RS31810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
2,692,901 + +0.4
2,693,793 - -2.4
2,693,817 + -0.3
2,693,817 + +0.2
2,693,817 + +0.5
2,693,825 + +0.4
2,694,443 + BPHYT_RS31805 0.46 -0.4
2,694,443 + BPHYT_RS31805 0.46 -0.2
2,694,917 + BPHYT_RS31805 0.82 -0.7
2,695,009 - BPHYT_RS31805 0.89 -0.6
2,695,039 - +0.8
2,695,317 + -0.6
2,695,337 + -0.3
2,695,378 + -0.1
2,695,406 + -0.6
2,696,095 - BPHYT_RS31810 0.63 +0.1

Or see this region's nucleotide sequence