Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28985 and BPHYT_RS28990 are separated by 378 nucleotides BPHYT_RS28990 and BPHYT_RS28995 are separated by 43 nucleotides BPHYT_RS28995 and BPHYT_RS29000 overlap by 4 nucleotides BPHYT_RS29000 and BPHYT_RS29005 are separated by 21 nucleotides
BPHYT_RS28985: BPHYT_RS28985 - hypothetical protein, at 2,059,118 to 2,059,858
_RS28985
BPHYT_RS28990: BPHYT_RS28990 - hypothetical protein, at 2,060,237 to 2,060,503
_RS28990
BPHYT_RS28995: BPHYT_RS28995 - histidine kinase, at 2,060,547 to 2,061,902
_RS28995
BPHYT_RS29000: BPHYT_RS29000 - transcriptional regulator, at 2,061,899 to 2,062,612
_RS29000
BPHYT_RS29005: BPHYT_RS29005 - transporter, at 2,062,634 to 2,065,765
_RS29005
Position (kb)
2060
2061
2062 Strain fitness (log2 ratio)
-1
0
1 at 2059.577 kb on + strand, within BPHYT_RS28985 at 2059.617 kb on - strand, within BPHYT_RS28985 at 2059.617 kb on - strand, within BPHYT_RS28985 at 2059.817 kb on + strand at 2059.997 kb on + strand at 2060.050 kb on + strand at 2060.050 kb on + strand at 2060.779 kb on + strand, within BPHYT_RS28995 at 2060.780 kb on - strand, within BPHYT_RS28995 at 2061.737 kb on - strand, within BPHYT_RS28995 at 2061.785 kb on - strand at 2061.888 kb on + strand at 2061.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 2,059,577 + BPHYT_RS28985 0.62 +0.2 2,059,617 - BPHYT_RS28985 0.67 +0.9 2,059,617 - BPHYT_RS28985 0.67 -1.4 2,059,817 + -0.8 2,059,997 + -0.2 2,060,050 + +1.1 2,060,050 + -0.8 2,060,779 + BPHYT_RS28995 0.17 +0.6 2,060,780 - BPHYT_RS28995 0.17 +0.8 2,061,737 - BPHYT_RS28995 0.88 +0.3 2,061,785 - -0.0 2,061,888 + -0.5 2,061,928 - -0.0
Or see this region's nucleotide sequence