Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24010

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24000 and BPHYT_RS24005 are separated by 102 nucleotidesBPHYT_RS24005 and BPHYT_RS24010 are separated by 14 nucleotidesBPHYT_RS24010 and BPHYT_RS24015 are separated by 35 nucleotidesBPHYT_RS24015 and BPHYT_RS24020 are separated by 38 nucleotides BPHYT_RS24000: BPHYT_RS24000 - L-histidine ABC transporter, substrate-binding component (from data), at 950,479 to 951,339 _RS24000 BPHYT_RS24005: BPHYT_RS24005 - L-histidine ABC transporter, permease component 1 (from data), at 951,442 to 952,164 _RS24005 BPHYT_RS24010: BPHYT_RS24010 - L-histidine ABC transporter, permease component 2 (from data), at 952,179 to 952,931 _RS24010 BPHYT_RS24015: BPHYT_RS24015 - L-histidine ABC transporter, ATPase component (from data), at 952,967 to 953,758 _RS24015 BPHYT_RS24020: BPHYT_RS24020 - phenylalanine/histidine ammonia-lyase, at 953,797 to 955,446 _RS24020 Position (kb) 952 953Strain fitness (log2 ratio) -2 -1 0 1at 951.436 kb on + strandat 951.491 kb on + strandat 951.622 kb on + strand, within BPHYT_RS24005at 951.622 kb on + strand, within BPHYT_RS24005at 951.791 kb on - strand, within BPHYT_RS24005at 952.039 kb on + strand, within BPHYT_RS24005at 952.467 kb on + strand, within BPHYT_RS24010at 952.467 kb on + strand, within BPHYT_RS24010at 952.791 kb on + strand, within BPHYT_RS24010

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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951,436 + +0.7
951,491 + -0.0
951,622 + BPHYT_RS24005 0.25 -1.9
951,622 + BPHYT_RS24005 0.25 -0.4
951,791 - BPHYT_RS24005 0.48 +0.7
952,039 + BPHYT_RS24005 0.83 +0.1
952,467 + BPHYT_RS24010 0.38 +0.3
952,467 + BPHYT_RS24010 0.38 +1.4
952,791 + BPHYT_RS24010 0.81 +1.3

Or see this region's nucleotide sequence