Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21245 and BPHYT_RS21250 are separated by 239 nucleotides BPHYT_RS21250 and BPHYT_RS21255 are separated by 88 nucleotides
BPHYT_RS21245: BPHYT_RS21245 - gluconolactonase, at 327,147 to 328,088
_RS21245
BPHYT_RS21250: BPHYT_RS21250 - ABC transporter substrate-binding protein, at 328,328 to 329,497
_RS21250
BPHYT_RS21255: BPHYT_RS21255 - spermidine/putrescine ABC transporter ATP-binding protein, at 329,586 to 330,665
_RS21255
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1 at 327.402 kb on - strand, within BPHYT_RS21245 at 327.468 kb on + strand, within BPHYT_RS21245 at 327.598 kb on - strand, within BPHYT_RS21245 at 327.736 kb on - strand, within BPHYT_RS21245 at 327.736 kb on - strand, within BPHYT_RS21245 at 327.736 kb on - strand, within BPHYT_RS21245 at 327.736 kb on - strand, within BPHYT_RS21245 at 327.935 kb on + strand, within BPHYT_RS21245 at 327.936 kb on - strand, within BPHYT_RS21245 at 327.936 kb on - strand, within BPHYT_RS21245 at 328.047 kb on + strand at 328.056 kb on + strand at 328.264 kb on - strand at 328.264 kb on - strand at 328.266 kb on + strand at 328.267 kb on - strand at 328.369 kb on - strand at 328.369 kb on - strand at 328.703 kb on + strand, within BPHYT_RS21250 at 328.765 kb on + strand, within BPHYT_RS21250 at 328.791 kb on - strand, within BPHYT_RS21250 at 328.791 kb on - strand, within BPHYT_RS21250 at 329.851 kb on + strand, within BPHYT_RS21255 at 329.862 kb on + strand, within BPHYT_RS21255 at 330.177 kb on + strand, within BPHYT_RS21255 at 330.276 kb on + strand, within BPHYT_RS21255 at 330.276 kb on + strand, within BPHYT_RS21255 at 330.458 kb on + strand, within BPHYT_RS21255
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 327,402 - BPHYT_RS21245 0.27 +1.6 327,468 + BPHYT_RS21245 0.34 +0.1 327,598 - BPHYT_RS21245 0.48 +0.5 327,736 - BPHYT_RS21245 0.63 +0.1 327,736 - BPHYT_RS21245 0.63 +0.0 327,736 - BPHYT_RS21245 0.63 +0.1 327,736 - BPHYT_RS21245 0.63 -0.0 327,935 + BPHYT_RS21245 0.84 -2.3 327,936 - BPHYT_RS21245 0.84 +0.0 327,936 - BPHYT_RS21245 0.84 +0.5 328,047 + -0.3 328,056 + -0.6 328,264 - -0.3 328,264 - +0.4 328,266 + -1.1 328,267 - -0.1 328,369 - -0.6 328,369 - +0.2 328,703 + BPHYT_RS21250 0.32 -0.4 328,765 + BPHYT_RS21250 0.37 +0.7 328,791 - BPHYT_RS21250 0.40 -0.7 328,791 - BPHYT_RS21250 0.40 -0.1 329,851 + BPHYT_RS21255 0.25 -0.4 329,862 + BPHYT_RS21255 0.26 -0.5 330,177 + BPHYT_RS21255 0.55 -0.7 330,276 + BPHYT_RS21255 0.64 -0.3 330,276 + BPHYT_RS21255 0.64 +1.5 330,458 + BPHYT_RS21255 0.81 +1.0
Or see this region's nucleotide sequence