Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04115 and BPHYT_RS04120 are separated by 336 nucleotides BPHYT_RS04120 and BPHYT_RS04125 are separated by 43 nucleotides
BPHYT_RS04115: BPHYT_RS04115 - glycosyhydrolase, at 938,921 to 940,375
_RS04115
BPHYT_RS04120: BPHYT_RS04120 - protein tyrosine kinase, at 940,712 to 943,066
_RS04120
BPHYT_RS04125: BPHYT_RS04125 - hypothetical protein, at 943,110 to 944,270
_RS04125
Position (kb) 940
941
942
943
944 Strain fitness (log2 ratio) -2
-1
0
1
2 at 939.757 kb on + strand, within BPHYT_RS04115 at 939.757 kb on + strand, within BPHYT_RS04115 at 939.833 kb on + strand, within BPHYT_RS04115 at 940.035 kb on - strand, within BPHYT_RS04115 at 940.254 kb on + strand at 940.271 kb on + strand at 940.272 kb on - strand at 940.404 kb on + strand at 940.919 kb on - strand at 941.443 kb on + strand, within BPHYT_RS04120 at 941.584 kb on + strand, within BPHYT_RS04120 at 941.928 kb on - strand, within BPHYT_RS04120 at 941.992 kb on - strand, within BPHYT_RS04120 at 942.318 kb on - strand, within BPHYT_RS04120 at 942.417 kb on + strand, within BPHYT_RS04120 at 942.463 kb on - strand, within BPHYT_RS04120 at 942.786 kb on - strand, within BPHYT_RS04120 at 943.002 kb on - strand at 943.002 kb on - strand at 943.034 kb on - strand at 943.386 kb on - strand, within BPHYT_RS04125 at 943.450 kb on - strand, within BPHYT_RS04125 at 943.622 kb on + strand, within BPHYT_RS04125 at 943.622 kb on + strand, within BPHYT_RS04125 at 943.671 kb on + strand, within BPHYT_RS04125 at 943.791 kb on + strand, within BPHYT_RS04125 at 943.792 kb on - strand, within BPHYT_RS04125 at 943.795 kb on - strand, within BPHYT_RS04125 at 943.966 kb on - strand, within BPHYT_RS04125
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 939,757 + BPHYT_RS04115 0.57 -0.6 939,757 + BPHYT_RS04115 0.57 +0.1 939,833 + BPHYT_RS04115 0.63 -0.8 940,035 - BPHYT_RS04115 0.77 +1.0 940,254 + -1.8 940,271 + -0.2 940,272 - -0.1 940,404 + +0.1 940,919 - +0.7 941,443 + BPHYT_RS04120 0.31 +0.6 941,584 + BPHYT_RS04120 0.37 +0.6 941,928 - BPHYT_RS04120 0.52 +1.8 941,992 - BPHYT_RS04120 0.54 +0.2 942,318 - BPHYT_RS04120 0.68 +0.8 942,417 + BPHYT_RS04120 0.72 +1.7 942,463 - BPHYT_RS04120 0.74 -0.3 942,786 - BPHYT_RS04120 0.88 +0.1 943,002 - +1.0 943,002 - -0.1 943,034 - +0.7 943,386 - BPHYT_RS04125 0.24 +0.7 943,450 - BPHYT_RS04125 0.29 +0.4 943,622 + BPHYT_RS04125 0.44 +0.6 943,622 + BPHYT_RS04125 0.44 +0.9 943,671 + BPHYT_RS04125 0.48 +0.4 943,791 + BPHYT_RS04125 0.59 +1.0 943,792 - BPHYT_RS04125 0.59 +0.3 943,795 - BPHYT_RS04125 0.59 +0.6 943,966 - BPHYT_RS04125 0.74 +1.1
Or see this region's nucleotide sequence