Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04045 and BPHYT_RS04050 are separated by 117 nucleotides BPHYT_RS04050 and BPHYT_RS04055 are separated by 330 nucleotides
BPHYT_RS04045: BPHYT_RS04045 - acyltransferase, at 922,428 to 923,582
_RS04045
BPHYT_RS04050: BPHYT_RS04050 - group 1 glycosyl transferase, at 923,700 to 924,905
_RS04050
BPHYT_RS04055: BPHYT_RS04055 - PST family polysaccharide export protein, at 925,236 to 926,489
_RS04055
Position (kb) 923
924
925 Strain fitness (log2 ratio) -1
0
1
2 at 922.729 kb on - strand, within BPHYT_RS04045 at 922.732 kb on - strand, within BPHYT_RS04045 at 922.816 kb on - strand, within BPHYT_RS04045 at 923.073 kb on + strand, within BPHYT_RS04045 at 923.457 kb on + strand, within BPHYT_RS04045 at 923.744 kb on + strand at 923.744 kb on + strand at 923.979 kb on - strand, within BPHYT_RS04050 at 923.979 kb on - strand, within BPHYT_RS04050 at 924.179 kb on - strand, within BPHYT_RS04050 at 924.179 kb on - strand, within BPHYT_RS04050 at 924.550 kb on + strand, within BPHYT_RS04050 at 924.877 kb on + strand at 924.878 kb on - strand at 924.878 kb on - strand at 924.920 kb on + strand at 924.986 kb on + strand at 924.991 kb on - strand at 925.148 kb on + strand at 925.149 kb on - strand at 925.659 kb on + strand, within BPHYT_RS04055 at 925.660 kb on - strand, within BPHYT_RS04055 at 925.663 kb on - strand, within BPHYT_RS04055 at 925.755 kb on + strand, within BPHYT_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 922,729 - BPHYT_RS04045 0.26 +1.2 922,732 - BPHYT_RS04045 0.26 +1.8 922,816 - BPHYT_RS04045 0.34 +1.1 923,073 + BPHYT_RS04045 0.56 +0.7 923,457 + BPHYT_RS04045 0.89 +1.2 923,744 + +1.1 923,744 + +1.7 923,979 - BPHYT_RS04050 0.23 +1.1 923,979 - BPHYT_RS04050 0.23 +0.8 924,179 - BPHYT_RS04050 0.40 +0.9 924,179 - BPHYT_RS04050 0.40 +0.8 924,550 + BPHYT_RS04050 0.70 +1.6 924,877 + +0.9 924,878 - +0.2 924,878 - +1.1 924,920 + -0.6 924,986 + +0.5 924,991 - +0.4 925,148 + -0.1 925,149 - +0.4 925,659 + BPHYT_RS04055 0.34 +0.7 925,660 - BPHYT_RS04055 0.34 +1.4 925,663 - BPHYT_RS04055 0.34 +2.3 925,755 + BPHYT_RS04055 0.41 +1.8
Or see this region's nucleotide sequence