Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18735

Experiment: CDM1 without Asparagine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Asparagine
1,993,626	-				-0.6
1,993,636	+				+0.2
1,993,644	+				+1.1
1,993,676	-				+0.4
1,993,710	+				-0.1
1,993,710	-				+1.0
1,993,710	-				+0.4
1,993,718	-				-0.1
1,993,748	-				+0.4
1,993,765	-				+1.2
1,993,766	-				-0.4
1,993,795	-				+1.8
1,993,845	-				+1.1
1,993,871	-		BBR_RS21065	0.36	-0.9
1,993,972	+				+1.5
1,993,974	+				-1.6
1,993,982	+				-1.0
1,993,982	+				-1.4
1,993,982	-				+2.1
1,993,986	+				+0.2
1,993,990	-				+1.6
1,993,996	+				+1.2
1,994,021	-				+0.9
1,994,024	+				+0.3
1,994,081	-				-0.1
1,994,121	+				-4.8
1,994,138	-				-5.0
1,994,138	-				-3.3
1,994,148	-		BBR_RS18735	0.11	-6.1
1,994,187	+		BBR_RS18735	0.17	-3.5
1,994,191	+		BBR_RS18735	0.18	-5.6
1,994,192	+		BBR_RS18735	0.18	-4.1
1,994,192	+		BBR_RS18735	0.18	-4.6
1,994,192	+		BBR_RS18735	0.18	-4.1
1,994,194	+		BBR_RS18735	0.19	-4.3
1,994,200	-		BBR_RS18735	0.20	-5.2
1,994,207	-		BBR_RS18735	0.21	-5.0
1,994,217	-		BBR_RS18735	0.22	-6.4
1,994,217	-		BBR_RS18735	0.22	-3.6
1,994,219	-		BBR_RS18735	0.23	-2.3
1,994,236	-		BBR_RS18735	0.25	-5.1
1,994,238	-		BBR_RS18735	0.26	-4.8
1,994,288	-		BBR_RS18735	0.34	-2.6
1,994,300	-		BBR_RS18735	0.36	-3.8
1,994,303	+		BBR_RS18735	0.36	-4.3
1,994,311	-		BBR_RS18735	0.37	-5.3
1,994,322	+		BBR_RS18735	0.39	-6.6
1,994,325	-		BBR_RS18735	0.40	-4.8
1,994,325	-		BBR_RS18735	0.40	-6.5
1,994,340	+		BBR_RS18735	0.42	-6.1
1,994,340	+		BBR_RS18735	0.42	-3.8
1,994,348	-		BBR_RS18735	0.43	-3.0
1,994,348	-		BBR_RS18735	0.43	-2.9
1,994,370	+		BBR_RS18735	0.47	-4.8
1,994,371	+		BBR_RS18735	0.47	-3.9
1,994,378	+		BBR_RS18735	0.48	-5.9
1,994,378	-		BBR_RS18735	0.48	-5.8
1,994,378	-		BBR_RS18735	0.48	-5.9
1,994,399	+		BBR_RS18735	0.51	-4.0
1,994,407	-		BBR_RS18735	0.53	-4.9
1,994,421	+		BBR_RS18735	0.55	-4.9
1,994,421	+		BBR_RS18735	0.55	-4.2
1,994,421	+		BBR_RS18735	0.55	-3.7
1,994,421	+		BBR_RS18735	0.55	-4.4
1,994,429	-		BBR_RS18735	0.56	-4.3
1,994,429	-		BBR_RS18735	0.56	-4.0
1,994,446	-		BBR_RS18735	0.59	-4.5
1,994,446	-		BBR_RS18735	0.59	-4.3
1,994,446	-		BBR_RS18735	0.59	-3.4
1,994,450	+		BBR_RS18735	0.60	-4.6
1,994,460	+		BBR_RS18735	0.61	-4.4
1,994,468	-		BBR_RS18735	0.62	-3.9
1,994,468	-		BBR_RS18735	0.62	-5.9
1,994,468	-		BBR_RS18735	0.62	-4.0
1,994,468	-		BBR_RS18735	0.62	-3.9
1,994,468	-		BBR_RS18735	0.62	-5.4
1,994,468	-		BBR_RS18735	0.62	-2.9
1,994,468	-		BBR_RS18735	0.62	-4.9
1,994,468	-		BBR_RS18735	0.62	-4.8
1,994,468	-		BBR_RS18735	0.62	-4.8
1,994,468	-		BBR_RS18735	0.62	-4.5
1,994,468	-		BBR_RS18735	0.62	-4.6
1,994,478	-		BBR_RS18735	0.64	-5.5
1,994,493	+		BBR_RS18735	0.67	-1.4
1,994,493	+		BBR_RS18735	0.67	-2.6
1,994,513	-		BBR_RS18735	0.70	-0.5
1,994,557	-		BBR_RS18735	0.77	-6.4
1,994,557	-		BBR_RS18735	0.77	-3.6
1,994,557	-		BBR_RS18735	0.77	-6.1
1,994,660	+				-5.2
1,994,661	+				-4.5
1,994,669	-				+0.8
1,994,669	-				-3.6
1,994,669	-				-1.8
1,994,684	-				-3.2
1,994,684	-				-5.1
1,994,765	-				-0.2
1,994,812	+				+0.2
1,994,812	+				+0.1
1,994,820	-				-0.3
1,994,820	-				+0.9
1,994,836	+				+1.3
1,994,849	-				+1.5
1,994,849	-				+1.1
1,994,849	-				-1.0
1,994,887	-				-0.1
1,994,900	-				-0.6
1,994,915	-				+1.0
1,994,915	-				-0.2
1,994,915	-				+1.0
1,994,950	+				+1.1
1,994,950	+				+0.8
1,994,960	+				-0.5
1,995,001	+		BBR_RS18740	0.12	-1.2
1,995,001	+		BBR_RS18740	0.12	+2.0
1,995,001	+		BBR_RS18740	0.12	-0.1
1,995,009	-		BBR_RS18740	0.13	-0.6
1,995,011	-		BBR_RS18740	0.13	-0.9
1,995,100	-		BBR_RS18740	0.19	+0.0
1,995,105	-		BBR_RS18740	0.19	-0.9
1,995,115	+		BBR_RS18740	0.20	-1.7
1,995,118	-		BBR_RS18740	0.20	+1.4
1,995,123	-		BBR_RS18740	0.20	+0.5
1,995,128	-		BBR_RS18740	0.20	-1.5
1,995,147	+		BBR_RS18740	0.22	-0.2
1,995,161	+		BBR_RS18740	0.23	+0.3
1,995,161	+		BBR_RS18740	0.23	+0.0
1,995,169	-		BBR_RS18740	0.23	+0.1
1,995,175	+		BBR_RS18740	0.24	-0.4
1,995,185	-		BBR_RS18740	0.24	-0.1
1,995,193	+		BBR_RS18740	0.25	+0.0
1,995,203	-		BBR_RS18740	0.25	-0.5
1,995,203	-		BBR_RS18740	0.25	+0.3
1,995,203	-		BBR_RS18740	0.25	+0.8
1,995,239	-		BBR_RS18740	0.28	-0.8
1,995,243	-		BBR_RS18740	0.28	-0.9
1,995,266	+		BBR_RS18740	0.30	-1.8
1,995,274	-		BBR_RS18740	0.30	+0.5
1,995,294	+		BBR_RS18740	0.32	+0.4
1,995,294	+		BBR_RS18740	0.32	+0.7
1,995,297	+		BBR_RS18740	0.32	+0.1
1,995,300	-		BBR_RS18740	0.32	+1.2
1,995,302	-		BBR_RS18740	0.32	+2.1
1,995,302	-		BBR_RS18740	0.32	+1.0
1,995,320	+		BBR_RS18740	0.33	-0.3
1,995,320	+		BBR_RS18740	0.33	+0.5
1,995,325	-		BBR_RS18740	0.34	+1.3
1,995,325	-		BBR_RS18740	0.34	+1.3
1,995,330	-		BBR_RS18740	0.34	-1.0
1,995,348	+		BBR_RS18740	0.35	-0.9
1,995,356	-		BBR_RS18740	0.36	-1.0
1,995,356	-		BBR_RS18740	0.36	-0.7
1,995,375	-		BBR_RS18740	0.37	+0.7
1,995,386	+		BBR_RS18740	0.38	+0.7
1,995,386	+		BBR_RS18740	0.38	+0.9
1,995,386	+		BBR_RS18740	0.38	-0.4
1,995,403	+		BBR_RS18740	0.39	+0.0
1,995,408	+		BBR_RS18740	0.39	-2.0
1,995,408	-		BBR_RS18740	0.39	+0.4
1,995,416	-		BBR_RS18740	0.40	+0.6
1,995,418	-		BBR_RS18740	0.40	-1.5
1,995,421	-		BBR_RS18740	0.40	+0.0
1,995,431	-		BBR_RS18740	0.41	+0.2
1,995,453	+		BBR_RS18740	0.42	-0.5
1,995,453	+		BBR_RS18740	0.42	+0.3
1,995,459	+		BBR_RS18740	0.43	-1.6
1,995,467	-		BBR_RS18740	0.43	-1.7
1,995,497	+		BBR_RS18740	0.45	-2.5
1,995,497	+		BBR_RS18740	0.45	+1.2
1,995,497	+		BBR_RS18740	0.45	+0.1
1,995,497	+		BBR_RS18740	0.45	+0.4
1,995,497	+		BBR_RS18740	0.45	+0.5
1,995,497	+		BBR_RS18740	0.45	+0.6
1,995,497	+		BBR_RS18740	0.45	+0.6
1,995,505	-		BBR_RS18740	0.46	+0.1
1,995,507	+		BBR_RS18740	0.46	+0.1
1,995,509	+		BBR_RS18740	0.46	-0.8
1,995,509	+		BBR_RS18740	0.46	+0.4
1,995,515	-		BBR_RS18740	0.46	-0.9
1,995,537	-		BBR_RS18740	0.48	+0.9
1,995,550	+		BBR_RS18740	0.49	+1.1
1,995,607	+		BBR_RS18740	0.52	-0.1
1,995,607	+		BBR_RS18740	0.52	+0.9
1,995,607	+		BBR_RS18740	0.52	-0.3
1,995,622	-		BBR_RS18740	0.53	+1.2
1,995,649	+		BBR_RS18740	0.55	+0.0
1,995,678	+		BBR_RS18740	0.57	-0.3
1,995,678	+		BBR_RS18740	0.57	-2.0
1,995,686	-		BBR_RS18740	0.58	-1.9
1,995,686	-		BBR_RS18740	0.58	+0.7