Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22880

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22875 and AO356_22880 are separated by 41 nucleotidesAO356_22880 and AO356_22885 are separated by 371 nucleotides AO356_22875: AO356_22875 - chemotaxis protein, at 5,105,575 to 5,107,200 _22875 AO356_22880: AO356_22880 - aspartate aminotransferase, at 5,107,242 to 5,108,429 _22880 AO356_22885: AO356_22885 - hypothetical protein, at 5,108,801 to 5,109,604 _22885 Position (kb) 5107 5108 5109Strain fitness (log2 ratio) -1 0 1at 5107.203 kb on + strandat 5107.204 kb on - strandat 5107.239 kb on + strandat 5107.239 kb on + strandat 5107.239 kb on + strandat 5107.239 kb on + strandat 5107.239 kb on + strandat 5107.239 kb on + strandat 5107.239 kb on + strandat 5107.240 kb on - strandat 5107.240 kb on - strandat 5107.240 kb on - strandat 5107.240 kb on - strandat 5107.240 kb on - strandat 5107.240 kb on - strandat 5107.298 kb on + strandat 5107.435 kb on - strand, within AO356_22880at 5107.511 kb on - strand, within AO356_22880at 5107.617 kb on + strand, within AO356_22880at 5107.617 kb on + strand, within AO356_22880at 5107.617 kb on + strand, within AO356_22880at 5107.617 kb on + strand, within AO356_22880at 5107.617 kb on + strand, within AO356_22880at 5107.618 kb on - strand, within AO356_22880at 5107.618 kb on - strand, within AO356_22880at 5107.618 kb on - strand, within AO356_22880at 5107.618 kb on - strand, within AO356_22880at 5107.618 kb on - strand, within AO356_22880at 5107.626 kb on + strand, within AO356_22880at 5107.626 kb on + strand, within AO356_22880at 5107.627 kb on - strand, within AO356_22880at 5107.860 kb on + strand, within AO356_22880at 5107.860 kb on + strand, within AO356_22880at 5107.861 kb on - strand, within AO356_22880at 5107.861 kb on - strand, within AO356_22880at 5107.861 kb on - strand, within AO356_22880at 5107.861 kb on - strand, within AO356_22880at 5107.875 kb on + strand, within AO356_22880at 5107.875 kb on + strand, within AO356_22880at 5107.875 kb on + strand, within AO356_22880at 5107.875 kb on + strand, within AO356_22880at 5107.876 kb on - strand, within AO356_22880at 5107.876 kb on - strand, within AO356_22880at 5108.277 kb on + strand, within AO356_22880at 5108.331 kb on - strandat 5108.472 kb on + strandat 5108.473 kb on - strandat 5108.476 kb on + strandat 5108.476 kb on + strandat 5108.477 kb on - strandat 5108.477 kb on - strandat 5108.477 kb on - strandat 5108.513 kb on + strandat 5108.524 kb on - strandat 5108.547 kb on + strandat 5108.569 kb on - strandat 5108.624 kb on + strandat 5108.625 kb on - strandat 5108.796 kb on + strandat 5108.796 kb on + strandat 5108.796 kb on + strandat 5108.797 kb on - strandat 5108.800 kb on + strandat 5108.800 kb on + strandat 5108.801 kb on - strandat 5108.801 kb on - strandat 5108.881 kb on + strandat 5108.881 kb on + strandat 5108.882 kb on - strand, within AO356_22885at 5109.013 kb on - strand, within AO356_22885at 5109.015 kb on + strand, within AO356_22885at 5109.016 kb on - strand, within AO356_22885at 5109.016 kb on - strand, within AO356_22885at 5109.057 kb on + strand, within AO356_22885at 5109.057 kb on + strand, within AO356_22885at 5109.061 kb on + strand, within AO356_22885at 5109.062 kb on - strand, within AO356_22885at 5109.146 kb on + strand, within AO356_22885at 5109.175 kb on - strand, within AO356_22885at 5109.231 kb on - strand, within AO356_22885at 5109.324 kb on + strand, within AO356_22885

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,107,203 + -0.6
5,107,204 - +0.4
5,107,239 + +0.2
5,107,239 + +1.3
5,107,239 + +0.3
5,107,239 + -0.8
5,107,239 + -0.8
5,107,239 + +1.5
5,107,239 + +0.5
5,107,240 - +0.1
5,107,240 - +0.4
5,107,240 - -0.8
5,107,240 - +0.6
5,107,240 - +0.2
5,107,240 - +1.0
5,107,298 + -0.5
5,107,435 - AO356_22880 0.16 +0.1
5,107,511 - AO356_22880 0.23 -0.3
5,107,617 + AO356_22880 0.32 +0.3
5,107,617 + AO356_22880 0.32 +0.0
5,107,617 + AO356_22880 0.32 -0.0
5,107,617 + AO356_22880 0.32 -0.2
5,107,617 + AO356_22880 0.32 -0.6
5,107,618 - AO356_22880 0.32 +0.3
5,107,618 - AO356_22880 0.32 +0.0
5,107,618 - AO356_22880 0.32 -0.1
5,107,618 - AO356_22880 0.32 -0.5
5,107,618 - AO356_22880 0.32 +0.2
5,107,626 + AO356_22880 0.32 -0.9
5,107,626 + AO356_22880 0.32 +0.6
5,107,627 - AO356_22880 0.32 +1.0
5,107,860 + AO356_22880 0.52 -0.4
5,107,860 + AO356_22880 0.52 +0.0
5,107,861 - AO356_22880 0.52 +0.0
5,107,861 - AO356_22880 0.52 -0.2
5,107,861 - AO356_22880 0.52 -0.4
5,107,861 - AO356_22880 0.52 +0.0
5,107,875 + AO356_22880 0.53 +0.0
5,107,875 + AO356_22880 0.53 -0.5
5,107,875 + AO356_22880 0.53 +0.1
5,107,875 + AO356_22880 0.53 +0.8
5,107,876 - AO356_22880 0.53 +0.2
5,107,876 - AO356_22880 0.53 +0.4
5,108,277 + AO356_22880 0.87 +0.0
5,108,331 - -1.1
5,108,472 + +0.5
5,108,473 - +0.1
5,108,476 + -0.5
5,108,476 + +0.3
5,108,477 - +1.0
5,108,477 - +0.7
5,108,477 - +0.3
5,108,513 + -0.4
5,108,524 - +0.5
5,108,547 + +0.1
5,108,569 - -0.3
5,108,624 + +1.5
5,108,625 - -0.3
5,108,796 + +0.9
5,108,796 + +0.3
5,108,796 + +0.5
5,108,797 - +0.5
5,108,800 + +0.4
5,108,800 + +0.1
5,108,801 - +0.2
5,108,801 - -0.7
5,108,881 + +0.7
5,108,881 + -0.3
5,108,882 - AO356_22885 0.10 +0.6
5,109,013 - AO356_22885 0.26 +1.5
5,109,015 + AO356_22885 0.27 +0.5
5,109,016 - AO356_22885 0.27 -1.3
5,109,016 - AO356_22885 0.27 -0.8
5,109,057 + AO356_22885 0.32 +0.4
5,109,057 + AO356_22885 0.32 +0.5
5,109,061 + AO356_22885 0.32 +0.3
5,109,062 - AO356_22885 0.32 +0.5
5,109,146 + AO356_22885 0.43 +0.5
5,109,175 - AO356_22885 0.47 -0.0
5,109,231 - AO356_22885 0.53 +0.3
5,109,324 + AO356_22885 0.65 +1.4

Or see this region's nucleotide sequence