Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22505

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22500 and AO356_22505 are separated by 125 nucleotidesAO356_22505 and AO356_22510 are separated by 293 nucleotides AO356_22500: AO356_22500 - hypothetical protein, at 5,028,264 to 5,029,190 _22500 AO356_22505: AO356_22505 - TonB-dependent receptor, at 5,029,316 to 5,031,715 _22505 AO356_22510: AO356_22510 - glyoxalase, at 5,032,009 to 5,032,440 _22510 Position (kb) 5029 5030 5031 5032Strain fitness (log2 ratio) -1 0 1 2at 5028.433 kb on + strand, within AO356_22500at 5028.433 kb on + strand, within AO356_22500at 5028.434 kb on - strand, within AO356_22500at 5028.434 kb on - strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.562 kb on - strand, within AO356_22500at 5028.562 kb on - strand, within AO356_22500at 5029.224 kb on - strandat 5029.224 kb on - strandat 5029.466 kb on + strandat 5029.466 kb on + strandat 5029.466 kb on + strandat 5029.521 kb on - strandat 5029.778 kb on + strand, within AO356_22505at 5029.779 kb on - strand, within AO356_22505at 5029.779 kb on - strand, within AO356_22505at 5029.779 kb on - strand, within AO356_22505at 5029.779 kb on - strand, within AO356_22505at 5030.117 kb on + strand, within AO356_22505at 5030.117 kb on + strand, within AO356_22505at 5030.118 kb on - strand, within AO356_22505at 5030.354 kb on + strand, within AO356_22505at 5030.354 kb on + strand, within AO356_22505at 5030.355 kb on - strand, within AO356_22505at 5030.355 kb on - strand, within AO356_22505at 5030.374 kb on + strand, within AO356_22505at 5030.426 kb on + strand, within AO356_22505at 5030.426 kb on + strand, within AO356_22505at 5030.426 kb on + strand, within AO356_22505at 5030.426 kb on + strand, within AO356_22505at 5030.426 kb on + strand, within AO356_22505at 5030.465 kb on + strand, within AO356_22505at 5030.465 kb on + strand, within AO356_22505at 5030.465 kb on + strand, within AO356_22505at 5030.465 kb on + strand, within AO356_22505at 5030.465 kb on + strand, within AO356_22505at 5030.465 kb on + strand, within AO356_22505at 5030.465 kb on + strand, within AO356_22505at 5030.465 kb on + strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.466 kb on - strand, within AO356_22505at 5030.514 kb on - strand, within AO356_22505at 5030.534 kb on + strand, within AO356_22505at 5030.535 kb on - strand, within AO356_22505at 5030.535 kb on - strand, within AO356_22505at 5030.556 kb on - strand, within AO356_22505at 5030.556 kb on - strand, within AO356_22505at 5030.567 kb on + strand, within AO356_22505at 5030.567 kb on + strand, within AO356_22505at 5030.567 kb on + strand, within AO356_22505at 5030.567 kb on + strand, within AO356_22505at 5030.568 kb on - strand, within AO356_22505at 5030.568 kb on - strand, within AO356_22505at 5030.568 kb on - strand, within AO356_22505at 5030.568 kb on - strand, within AO356_22505at 5030.609 kb on + strand, within AO356_22505at 5030.777 kb on + strand, within AO356_22505at 5030.778 kb on - strand, within AO356_22505at 5030.778 kb on - strand, within AO356_22505at 5030.866 kb on + strand, within AO356_22505at 5030.990 kb on + strand, within AO356_22505at 5030.990 kb on + strand, within AO356_22505at 5031.018 kb on - strand, within AO356_22505at 5031.044 kb on + strand, within AO356_22505at 5031.044 kb on + strand, within AO356_22505at 5031.045 kb on - strand, within AO356_22505at 5031.057 kb on - strand, within AO356_22505at 5031.181 kb on + strand, within AO356_22505at 5031.181 kb on + strand, within AO356_22505at 5031.248 kb on + strand, within AO356_22505at 5031.484 kb on - strandat 5031.484 kb on - strandat 5031.524 kb on + strandat 5031.524 kb on + strandat 5031.524 kb on + strandat 5031.525 kb on - strandat 5031.525 kb on - strandat 5031.636 kb on - strandat 5031.636 kb on - strandat 5031.730 kb on - strandat 5031.759 kb on - strandat 5031.797 kb on + strandat 5031.798 kb on - strandat 5031.816 kb on + strandat 5031.816 kb on + strandat 5031.816 kb on + strandat 5031.816 kb on + strandat 5031.816 kb on + strandat 5031.817 kb on - strandat 5031.892 kb on + strandat 5031.953 kb on + strandat 5031.953 kb on + strandat 5031.963 kb on - strandat 5031.963 kb on - strandat 5032.016 kb on + strandat 5032.016 kb on + strandat 5032.016 kb on + strandat 5032.017 kb on - strandat 5032.017 kb on - strandat 5032.020 kb on + strandat 5032.020 kb on + strandat 5032.041 kb on - strandat 5032.100 kb on + strand, within AO356_22510at 5032.100 kb on + strand, within AO356_22510at 5032.100 kb on + strand, within AO356_22510at 5032.100 kb on + strand, within AO356_22510at 5032.100 kb on + strand, within AO356_22510at 5032.100 kb on + strand, within AO356_22510at 5032.101 kb on - strand, within AO356_22510at 5032.101 kb on - strand, within AO356_22510at 5032.101 kb on - strand, within AO356_22510at 5032.105 kb on + strand, within AO356_22510at 5032.105 kb on + strand, within AO356_22510at 5032.106 kb on - strand, within AO356_22510at 5032.157 kb on + strand, within AO356_22510at 5032.157 kb on + strand, within AO356_22510at 5032.158 kb on - strand, within AO356_22510at 5032.158 kb on - strand, within AO356_22510at 5032.158 kb on - strand, within AO356_22510at 5032.158 kb on - strand, within AO356_22510at 5032.158 kb on - strand, within AO356_22510at 5032.158 kb on - strand, within AO356_22510at 5032.250 kb on + strand, within AO356_22510at 5032.251 kb on - strand, within AO356_22510at 5032.251 kb on - strand, within AO356_22510at 5032.343 kb on + strand, within AO356_22510at 5032.343 kb on + strand, within AO356_22510at 5032.343 kb on + strand, within AO356_22510at 5032.343 kb on + strand, within AO356_22510at 5032.344 kb on - strand, within AO356_22510at 5032.344 kb on - strand, within AO356_22510at 5032.349 kb on + strand, within AO356_22510at 5032.349 kb on + strand, within AO356_22510at 5032.350 kb on - strand, within AO356_22510at 5032.350 kb on - strand, within AO356_22510at 5032.387 kb on + strand, within AO356_22510at 5032.394 kb on + strand, within AO356_22510at 5032.394 kb on + strand, within AO356_22510at 5032.395 kb on - strand, within AO356_22510at 5032.395 kb on - strand, within AO356_22510at 5032.404 kb on - strandat 5032.404 kb on - strandat 5032.476 kb on - strandat 5032.510 kb on - strandat 5032.581 kb on + strandat 5032.582 kb on - strandat 5032.582 kb on - strandat 5032.582 kb on - strandat 5032.582 kb on - strandat 5032.643 kb on + strandat 5032.643 kb on + strandat 5032.643 kb on + strandat 5032.644 kb on - strandat 5032.644 kb on - strandat 5032.645 kb on + strandat 5032.646 kb on - strandat 5032.688 kb on + strandat 5032.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,028,433 + AO356_22500 0.18 -1.2
5,028,433 + AO356_22500 0.18 -0.5
5,028,434 - AO356_22500 0.18 -0.7
5,028,434 - AO356_22500 0.18 +0.3
5,028,561 + AO356_22500 0.32 +0.0
5,028,561 + AO356_22500 0.32 -0.5
5,028,561 + AO356_22500 0.32 +0.1
5,028,561 + AO356_22500 0.32 -0.7
5,028,561 + AO356_22500 0.32 +1.7
5,028,561 + AO356_22500 0.32 -0.7
5,028,562 - AO356_22500 0.32 +0.1
5,028,562 - AO356_22500 0.32 +0.1
5,029,224 - -0.4
5,029,224 - +0.7
5,029,466 + -0.0
5,029,466 + -0.1
5,029,466 + +0.3
5,029,521 - +0.1
5,029,778 + AO356_22505 0.19 +0.3
5,029,779 - AO356_22505 0.19 +0.0
5,029,779 - AO356_22505 0.19 +0.8
5,029,779 - AO356_22505 0.19 -0.5
5,029,779 - AO356_22505 0.19 +0.8
5,030,117 + AO356_22505 0.33 +0.6
5,030,117 + AO356_22505 0.33 -0.6
5,030,118 - AO356_22505 0.33 -0.5
5,030,354 + AO356_22505 0.43 -0.5
5,030,354 + AO356_22505 0.43 -0.5
5,030,355 - AO356_22505 0.43 -0.2
5,030,355 - AO356_22505 0.43 +0.2
5,030,374 + AO356_22505 0.44 +0.6
5,030,426 + AO356_22505 0.46 -0.9
5,030,426 + AO356_22505 0.46 +0.7
5,030,426 + AO356_22505 0.46 -1.0
5,030,426 + AO356_22505 0.46 +0.1
5,030,426 + AO356_22505 0.46 -0.1
5,030,465 + AO356_22505 0.48 -0.0
5,030,465 + AO356_22505 0.48 +0.3
5,030,465 + AO356_22505 0.48 +0.3
5,030,465 + AO356_22505 0.48 +1.0
5,030,465 + AO356_22505 0.48 +0.4
5,030,465 + AO356_22505 0.48 -0.5
5,030,465 + AO356_22505 0.48 +0.2
5,030,465 + AO356_22505 0.48 +0.5
5,030,466 - AO356_22505 0.48 +0.3
5,030,466 - AO356_22505 0.48 -0.3
5,030,466 - AO356_22505 0.48 -0.1
5,030,466 - AO356_22505 0.48 -0.5
5,030,466 - AO356_22505 0.48 -0.2
5,030,466 - AO356_22505 0.48 -0.2
5,030,466 - AO356_22505 0.48 +0.2
5,030,466 - AO356_22505 0.48 -0.3
5,030,466 - AO356_22505 0.48 -0.3
5,030,466 - AO356_22505 0.48 +0.3
5,030,514 - AO356_22505 0.50 +0.1
5,030,534 + AO356_22505 0.51 +0.1
5,030,535 - AO356_22505 0.51 -0.6
5,030,535 - AO356_22505 0.51 +0.2
5,030,556 - AO356_22505 0.52 -0.1
5,030,556 - AO356_22505 0.52 +0.4
5,030,567 + AO356_22505 0.52 +1.3
5,030,567 + AO356_22505 0.52 +0.7
5,030,567 + AO356_22505 0.52 +0.3
5,030,567 + AO356_22505 0.52 -0.3
5,030,568 - AO356_22505 0.52 +2.0
5,030,568 - AO356_22505 0.52 -0.3
5,030,568 - AO356_22505 0.52 +0.5
5,030,568 - AO356_22505 0.52 +0.1
5,030,609 + AO356_22505 0.54 +0.1
5,030,777 + AO356_22505 0.61 +0.0
5,030,778 - AO356_22505 0.61 -0.4
5,030,778 - AO356_22505 0.61 +0.6
5,030,866 + AO356_22505 0.65 -0.4
5,030,990 + AO356_22505 0.70 +0.5
5,030,990 + AO356_22505 0.70 -0.3
5,031,018 - AO356_22505 0.71 +0.5
5,031,044 + AO356_22505 0.72 +0.7
5,031,044 + AO356_22505 0.72 +0.6
5,031,045 - AO356_22505 0.72 +0.0
5,031,057 - AO356_22505 0.73 -0.8
5,031,181 + AO356_22505 0.78 +0.2
5,031,181 + AO356_22505 0.78 +0.7
5,031,248 + AO356_22505 0.81 +0.6
5,031,484 - +0.3
5,031,484 - -0.8
5,031,524 + +0.2
5,031,524 + +0.2
5,031,524 + +0.0
5,031,525 - -0.4
5,031,525 - -0.2
5,031,636 - -0.2
5,031,636 - -0.0
5,031,730 - -0.4
5,031,759 - -1.5
5,031,797 + +0.9
5,031,798 - -0.1
5,031,816 + +0.6
5,031,816 + -0.3
5,031,816 + +1.3
5,031,816 + +0.4
5,031,816 + +1.7
5,031,817 - +1.1
5,031,892 + -0.0
5,031,953 + -0.1
5,031,953 + -1.3
5,031,963 - -0.1
5,031,963 - +0.0
5,032,016 + +1.0
5,032,016 + -1.3
5,032,016 + -0.9
5,032,017 - -0.1
5,032,017 - -0.8
5,032,020 + +0.7
5,032,020 + -0.1
5,032,041 - -0.6
5,032,100 + AO356_22510 0.21 -0.7
5,032,100 + AO356_22510 0.21 +0.1
5,032,100 + AO356_22510 0.21 +1.4
5,032,100 + AO356_22510 0.21 +0.1
5,032,100 + AO356_22510 0.21 +0.0
5,032,100 + AO356_22510 0.21 +0.3
5,032,101 - AO356_22510 0.21 -0.3
5,032,101 - AO356_22510 0.21 -0.2
5,032,101 - AO356_22510 0.21 +0.3
5,032,105 + AO356_22510 0.22 -0.4
5,032,105 + AO356_22510 0.22 -0.0
5,032,106 - AO356_22510 0.22 +0.3
5,032,157 + AO356_22510 0.34 -0.2
5,032,157 + AO356_22510 0.34 -0.2
5,032,158 - AO356_22510 0.34 -0.8
5,032,158 - AO356_22510 0.34 -0.1
5,032,158 - AO356_22510 0.34 +1.1
5,032,158 - AO356_22510 0.34 -0.7
5,032,158 - AO356_22510 0.34 -0.2
5,032,158 - AO356_22510 0.34 -0.3
5,032,250 + AO356_22510 0.56 +0.5
5,032,251 - AO356_22510 0.56 +0.9
5,032,251 - AO356_22510 0.56 +1.7
5,032,343 + AO356_22510 0.77 -0.1
5,032,343 + AO356_22510 0.77 -0.1
5,032,343 + AO356_22510 0.77 -0.2
5,032,343 + AO356_22510 0.77 +1.0
5,032,344 - AO356_22510 0.78 +0.0
5,032,344 - AO356_22510 0.78 +0.7
5,032,349 + AO356_22510 0.79 -0.1
5,032,349 + AO356_22510 0.79 -0.6
5,032,350 - AO356_22510 0.79 +0.7
5,032,350 - AO356_22510 0.79 +0.2
5,032,387 + AO356_22510 0.88 +0.8
5,032,394 + AO356_22510 0.89 +0.6
5,032,394 + AO356_22510 0.89 -0.1
5,032,395 - AO356_22510 0.89 +1.1
5,032,395 - AO356_22510 0.89 -0.6
5,032,404 - -0.1
5,032,404 - -0.8
5,032,476 - -0.1
5,032,510 - +0.5
5,032,581 + -0.5
5,032,582 - +1.4
5,032,582 - +1.1
5,032,582 - +0.7
5,032,582 - +0.1
5,032,643 + +2.0
5,032,643 + -0.8
5,032,643 + +0.3
5,032,644 - -0.1
5,032,644 - +0.4
5,032,645 + -0.4
5,032,646 - +0.8
5,032,688 + +0.7
5,032,689 - -0.6

Or see this region's nucleotide sequence