Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22480

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22475 and AO356_22480 are separated by 189 nucleotidesAO356_22480 and AO356_22485 are separated by 63 nucleotidesAO356_22485 and AO356_22490 are separated by 86 nucleotides AO356_22475: AO356_22475 - MFS transporter, at 5,022,118 to 5,023,461 _22475 AO356_22480: AO356_22480 - oxidoreductase, at 5,023,651 to 5,025,216 _22480 AO356_22485: AO356_22485 - hypothetical protein, at 5,025,280 to 5,026,053 _22485 AO356_22490: AO356_22490 - phosphohydrolase, at 5,026,140 to 5,027,579 _22490 Position (kb) 5023 5024 5025 5026Strain fitness (log2 ratio) -2 -1 0 1 2at 5022.689 kb on + strand, within AO356_22475at 5022.689 kb on + strand, within AO356_22475at 5022.689 kb on + strand, within AO356_22475at 5022.689 kb on + strand, within AO356_22475at 5022.709 kb on + strand, within AO356_22475at 5022.710 kb on - strand, within AO356_22475at 5022.710 kb on - strand, within AO356_22475at 5022.711 kb on + strand, within AO356_22475at 5022.711 kb on + strand, within AO356_22475at 5022.712 kb on - strand, within AO356_22475at 5022.877 kb on + strand, within AO356_22475at 5022.877 kb on + strand, within AO356_22475at 5022.877 kb on + strand, within AO356_22475at 5022.878 kb on - strand, within AO356_22475at 5022.878 kb on - strand, within AO356_22475at 5022.878 kb on - strand, within AO356_22475at 5022.882 kb on + strand, within AO356_22475at 5022.882 kb on + strand, within AO356_22475at 5022.883 kb on - strand, within AO356_22475at 5022.890 kb on + strand, within AO356_22475at 5022.962 kb on - strand, within AO356_22475at 5022.962 kb on - strand, within AO356_22475at 5023.016 kb on + strand, within AO356_22475at 5023.016 kb on + strand, within AO356_22475at 5023.016 kb on + strand, within AO356_22475at 5023.016 kb on + strand, within AO356_22475at 5023.016 kb on + strand, within AO356_22475at 5023.016 kb on + strand, within AO356_22475at 5023.016 kb on + strand, within AO356_22475at 5023.017 kb on - strand, within AO356_22475at 5023.017 kb on - strand, within AO356_22475at 5023.017 kb on - strand, within AO356_22475at 5023.017 kb on - strand, within AO356_22475at 5023.017 kb on - strand, within AO356_22475at 5023.020 kb on + strand, within AO356_22475at 5023.020 kb on + strand, within AO356_22475at 5023.020 kb on + strand, within AO356_22475at 5023.021 kb on - strand, within AO356_22475at 5023.021 kb on - strand, within AO356_22475at 5023.038 kb on - strand, within AO356_22475at 5023.038 kb on - strand, within AO356_22475at 5023.143 kb on - strand, within AO356_22475at 5023.143 kb on - strand, within AO356_22475at 5023.164 kb on - strand, within AO356_22475at 5023.213 kb on + strand, within AO356_22475at 5023.213 kb on + strand, within AO356_22475at 5023.213 kb on + strand, within AO356_22475at 5023.214 kb on - strand, within AO356_22475at 5023.214 kb on - strand, within AO356_22475at 5023.214 kb on - strand, within AO356_22475at 5023.351 kb on + strandat 5023.364 kb on - strandat 5023.364 kb on - strandat 5023.379 kb on - strandat 5023.417 kb on + strandat 5023.417 kb on + strandat 5023.418 kb on - strandat 5023.418 kb on - strandat 5023.460 kb on - strandat 5023.460 kb on - strandat 5023.533 kb on + strandat 5023.533 kb on + strandat 5023.534 kb on - strandat 5023.589 kb on + strandat 5023.589 kb on + strandat 5023.589 kb on + strandat 5023.589 kb on + strandat 5023.589 kb on + strandat 5023.589 kb on + strandat 5023.590 kb on - strandat 5023.590 kb on - strandat 5023.590 kb on - strandat 5023.590 kb on - strandat 5023.590 kb on - strandat 5023.591 kb on + strandat 5023.591 kb on + strandat 5023.591 kb on + strandat 5023.591 kb on + strandat 5023.592 kb on - strandat 5023.592 kb on - strandat 5023.592 kb on - strandat 5023.592 kb on - strandat 5023.592 kb on - strandat 5023.592 kb on - strandat 5023.619 kb on + strandat 5023.619 kb on + strandat 5023.619 kb on + strandat 5023.619 kb on + strandat 5023.619 kb on + strandat 5023.620 kb on - strandat 5023.620 kb on - strandat 5023.620 kb on - strandat 5023.632 kb on + strandat 5023.632 kb on + strandat 5023.633 kb on - strandat 5023.633 kb on - strandat 5023.652 kb on + strandat 5023.652 kb on + strandat 5023.734 kb on + strandat 5023.735 kb on - strandat 5023.796 kb on + strandat 5023.797 kb on - strandat 5023.869 kb on - strand, within AO356_22480at 5023.869 kb on - strand, within AO356_22480at 5024.237 kb on + strand, within AO356_22480at 5024.285 kb on + strand, within AO356_22480at 5024.285 kb on - strand, within AO356_22480at 5024.296 kb on - strand, within AO356_22480at 5024.296 kb on - strand, within AO356_22480at 5024.463 kb on - strand, within AO356_22480at 5024.463 kb on - strand, within AO356_22480at 5024.521 kb on - strand, within AO356_22480at 5024.591 kb on + strand, within AO356_22480at 5024.591 kb on + strand, within AO356_22480at 5024.591 kb on + strand, within AO356_22480at 5024.591 kb on + strand, within AO356_22480at 5024.591 kb on + strand, within AO356_22480at 5024.592 kb on - strand, within AO356_22480at 5024.600 kb on + strand, within AO356_22480at 5024.632 kb on + strand, within AO356_22480at 5024.632 kb on + strand, within AO356_22480at 5024.632 kb on + strand, within AO356_22480at 5024.632 kb on + strand, within AO356_22480at 5024.632 kb on + strand, within AO356_22480at 5024.632 kb on + strand, within AO356_22480at 5024.633 kb on - strand, within AO356_22480at 5024.633 kb on - strand, within AO356_22480at 5024.633 kb on - strand, within AO356_22480at 5024.633 kb on - strand, within AO356_22480at 5024.837 kb on + strand, within AO356_22480at 5024.837 kb on + strand, within AO356_22480at 5024.838 kb on - strand, within AO356_22480at 5025.191 kb on + strandat 5025.192 kb on - strandat 5025.192 kb on - strandat 5025.310 kb on + strandat 5025.311 kb on - strandat 5025.602 kb on + strand, within AO356_22485at 5025.603 kb on - strand, within AO356_22485at 5025.969 kb on + strand, within AO356_22485at 5025.969 kb on + strand, within AO356_22485at 5025.969 kb on + strand, within AO356_22485at 5025.969 kb on + strand, within AO356_22485at 5025.970 kb on - strand, within AO356_22485at 5025.970 kb on - strand, within AO356_22485at 5025.970 kb on - strand, within AO356_22485at 5026.118 kb on + strandat 5026.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,022,689 + AO356_22475 0.42 +0.1
5,022,689 + AO356_22475 0.42 -0.4
5,022,689 + AO356_22475 0.42 +0.3
5,022,689 + AO356_22475 0.42 -0.2
5,022,709 + AO356_22475 0.44 -0.3
5,022,710 - AO356_22475 0.44 -0.2
5,022,710 - AO356_22475 0.44 -0.1
5,022,711 + AO356_22475 0.44 -0.1
5,022,711 + AO356_22475 0.44 +0.4
5,022,712 - AO356_22475 0.44 +1.0
5,022,877 + AO356_22475 0.56 +0.7
5,022,877 + AO356_22475 0.56 -0.1
5,022,877 + AO356_22475 0.56 -0.3
5,022,878 - AO356_22475 0.57 -0.1
5,022,878 - AO356_22475 0.57 -0.0
5,022,878 - AO356_22475 0.57 -0.8
5,022,882 + AO356_22475 0.57 +1.0
5,022,882 + AO356_22475 0.57 -0.6
5,022,883 - AO356_22475 0.57 -0.5
5,022,890 + AO356_22475 0.57 -0.0
5,022,962 - AO356_22475 0.63 +0.5
5,022,962 - AO356_22475 0.63 +1.2
5,023,016 + AO356_22475 0.67 -0.7
5,023,016 + AO356_22475 0.67 +1.2
5,023,016 + AO356_22475 0.67 +0.8
5,023,016 + AO356_22475 0.67 +0.4
5,023,016 + AO356_22475 0.67 -0.3
5,023,016 + AO356_22475 0.67 +0.5
5,023,016 + AO356_22475 0.67 -0.7
5,023,017 - AO356_22475 0.67 +0.4
5,023,017 - AO356_22475 0.67 -1.0
5,023,017 - AO356_22475 0.67 -0.4
5,023,017 - AO356_22475 0.67 +0.4
5,023,017 - AO356_22475 0.67 -0.8
5,023,020 + AO356_22475 0.67 +1.0
5,023,020 + AO356_22475 0.67 +1.0
5,023,020 + AO356_22475 0.67 +0.9
5,023,021 - AO356_22475 0.67 +0.7
5,023,021 - AO356_22475 0.67 -0.8
5,023,038 - AO356_22475 0.68 -0.2
5,023,038 - AO356_22475 0.68 +0.2
5,023,143 - AO356_22475 0.76 -0.0
5,023,143 - AO356_22475 0.76 +0.3
5,023,164 - AO356_22475 0.78 +0.3
5,023,213 + AO356_22475 0.81 -0.7
5,023,213 + AO356_22475 0.81 +0.5
5,023,213 + AO356_22475 0.81 -0.6
5,023,214 - AO356_22475 0.82 -0.2
5,023,214 - AO356_22475 0.82 -1.2
5,023,214 - AO356_22475 0.82 -0.2
5,023,351 + +0.9
5,023,364 - -0.3
5,023,364 - +0.9
5,023,379 - -0.2
5,023,417 + -0.4
5,023,417 + -0.1
5,023,418 - -0.9
5,023,418 - -0.0
5,023,460 - -0.9
5,023,460 - -0.1
5,023,533 + +0.8
5,023,533 + -0.4
5,023,534 - -0.4
5,023,589 + -0.8
5,023,589 + +0.8
5,023,589 + -1.5
5,023,589 + +0.3
5,023,589 + -0.3
5,023,589 + +1.7
5,023,590 - -1.4
5,023,590 - -0.3
5,023,590 - +0.2
5,023,590 - +0.0
5,023,590 - +0.8
5,023,591 + -0.4
5,023,591 + +0.8
5,023,591 + -0.2
5,023,591 + +0.0
5,023,592 - +0.0
5,023,592 - +0.7
5,023,592 - -0.2
5,023,592 - +0.2
5,023,592 - +0.0
5,023,592 - +1.7
5,023,619 + +0.2
5,023,619 + +0.6
5,023,619 + +1.1
5,023,619 + +0.3
5,023,619 + -0.5
5,023,620 - -0.0
5,023,620 - -0.3
5,023,620 - +0.0
5,023,632 + -1.4
5,023,632 + +0.5
5,023,633 - -1.5
5,023,633 - +0.3
5,023,652 + -0.5
5,023,652 + +0.6
5,023,734 + -0.0
5,023,735 - +0.1
5,023,796 + -0.9
5,023,797 - +0.5
5,023,869 - AO356_22480 0.14 -0.0
5,023,869 - AO356_22480 0.14 -0.3
5,024,237 + AO356_22480 0.37 +0.4
5,024,285 + AO356_22480 0.40 +0.6
5,024,285 - AO356_22480 0.40 +0.2
5,024,296 - AO356_22480 0.41 +0.4
5,024,296 - AO356_22480 0.41 +0.4
5,024,463 - AO356_22480 0.52 -0.3
5,024,463 - AO356_22480 0.52 +0.1
5,024,521 - AO356_22480 0.56 -0.1
5,024,591 + AO356_22480 0.60 -0.0
5,024,591 + AO356_22480 0.60 +0.4
5,024,591 + AO356_22480 0.60 +0.3
5,024,591 + AO356_22480 0.60 +1.0
5,024,591 + AO356_22480 0.60 +0.1
5,024,592 - AO356_22480 0.60 +2.1
5,024,600 + AO356_22480 0.61 -0.3
5,024,632 + AO356_22480 0.63 -0.1
5,024,632 + AO356_22480 0.63 +0.4
5,024,632 + AO356_22480 0.63 -0.6
5,024,632 + AO356_22480 0.63 -1.1
5,024,632 + AO356_22480 0.63 -0.9
5,024,632 + AO356_22480 0.63 -0.1
5,024,633 - AO356_22480 0.63 +0.2
5,024,633 - AO356_22480 0.63 +0.6
5,024,633 - AO356_22480 0.63 -0.2
5,024,633 - AO356_22480 0.63 -0.1
5,024,837 + AO356_22480 0.76 -0.4
5,024,837 + AO356_22480 0.76 -0.1
5,024,838 - AO356_22480 0.76 -1.9
5,025,191 + +0.1
5,025,192 - +0.5
5,025,192 - +0.4
5,025,310 + -0.7
5,025,311 - +0.0
5,025,602 + AO356_22485 0.42 +0.8
5,025,603 - AO356_22485 0.42 +0.2
5,025,969 + AO356_22485 0.89 +0.1
5,025,969 + AO356_22485 0.89 -0.1
5,025,969 + AO356_22485 0.89 +0.5
5,025,969 + AO356_22485 0.89 +0.4
5,025,970 - AO356_22485 0.89 -1.6
5,025,970 - AO356_22485 0.89 +0.1
5,025,970 - AO356_22485 0.89 +0.2
5,026,118 + +0.9
5,026,146 - -1.2

Or see this region's nucleotide sequence