Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21470

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21465 and AO356_21470 are separated by 55 nucleotidesAO356_21470 and AO356_21475 overlap by 4 nucleotidesAO356_21475 and AO356_21480 are separated by 103 nucleotides AO356_21465: AO356_21465 - amidophosphoribosyltransferase, at 4,812,969 to 4,814,474 _21465 AO356_21470: AO356_21470 - O-succinylhomoserine sulfhydrylase, at 4,814,530 to 4,815,741 _21470 AO356_21475: AO356_21475 - oxidoreductase, at 4,815,738 to 4,816,511 _21475 AO356_21480: AO356_21480 - tRNA-Val, at 4,816,615 to 4,816,690 _21480 Position (kb) 4814 4815 4816Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4813.575 kb on + strand, within AO356_21465at 4813.576 kb on - strand, within AO356_21465at 4813.656 kb on + strand, within AO356_21465at 4813.657 kb on - strand, within AO356_21465at 4813.657 kb on - strand, within AO356_21465at 4814.137 kb on - strand, within AO356_21465at 4814.271 kb on + strand, within AO356_21465at 4814.272 kb on - strand, within AO356_21465at 4814.358 kb on + strandat 4814.359 kb on - strandat 4814.385 kb on + strandat 4814.411 kb on + strandat 4814.412 kb on - strandat 4814.464 kb on - strandat 4814.464 kb on - strandat 4814.476 kb on + strandat 4814.476 kb on + strandat 4814.579 kb on + strandat 4814.619 kb on + strandat 4814.655 kb on + strand, within AO356_21470at 4814.655 kb on + strand, within AO356_21470at 4814.655 kb on + strand, within AO356_21470at 4814.665 kb on + strand, within AO356_21470at 4814.665 kb on + strand, within AO356_21470at 4814.665 kb on + strand, within AO356_21470at 4814.666 kb on - strand, within AO356_21470at 4814.666 kb on - strand, within AO356_21470at 4814.666 kb on - strand, within AO356_21470at 4814.728 kb on + strand, within AO356_21470at 4814.737 kb on + strand, within AO356_21470at 4814.804 kb on + strand, within AO356_21470at 4814.953 kb on + strand, within AO356_21470at 4814.953 kb on + strand, within AO356_21470at 4814.954 kb on - strand, within AO356_21470at 4814.954 kb on - strand, within AO356_21470at 4814.954 kb on - strand, within AO356_21470at 4815.222 kb on - strand, within AO356_21470at 4815.418 kb on + strand, within AO356_21470at 4816.072 kb on - strand, within AO356_21475at 4816.138 kb on - strand, within AO356_21475at 4816.215 kb on + strand, within AO356_21475at 4816.216 kb on - strand, within AO356_21475at 4816.216 kb on - strand, within AO356_21475at 4816.399 kb on + strand, within AO356_21475at 4816.503 kb on + strandat 4816.503 kb on + strandat 4816.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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4,813,575 + AO356_21465 0.40 +0.2
4,813,576 - AO356_21465 0.40 -2.0
4,813,656 + AO356_21465 0.46 -2.0
4,813,657 - AO356_21465 0.46 -2.9
4,813,657 - AO356_21465 0.46 -1.8
4,814,137 - AO356_21465 0.78 -0.6
4,814,271 + AO356_21465 0.86 -2.7
4,814,272 - AO356_21465 0.87 -1.4
4,814,358 + -2.4
4,814,359 - -3.1
4,814,385 + -3.2
4,814,411 + +0.3
4,814,412 - +0.2
4,814,464 - -3.5
4,814,464 - -1.6
4,814,476 + +0.3
4,814,476 + -0.9
4,814,579 + -4.1
4,814,619 + -2.5
4,814,655 + AO356_21470 0.10 -2.5
4,814,655 + AO356_21470 0.10 -1.4
4,814,655 + AO356_21470 0.10 -3.0
4,814,665 + AO356_21470 0.11 -4.1
4,814,665 + AO356_21470 0.11 -3.1
4,814,665 + AO356_21470 0.11 -2.2
4,814,666 - AO356_21470 0.11 -0.8
4,814,666 - AO356_21470 0.11 -3.8
4,814,666 - AO356_21470 0.11 -3.5
4,814,728 + AO356_21470 0.16 -3.8
4,814,737 + AO356_21470 0.17 -3.7
4,814,804 + AO356_21470 0.23 -3.4
4,814,953 + AO356_21470 0.35 -0.2
4,814,953 + AO356_21470 0.35 -3.0
4,814,954 - AO356_21470 0.35 -4.1
4,814,954 - AO356_21470 0.35 -2.6
4,814,954 - AO356_21470 0.35 -2.2
4,815,222 - AO356_21470 0.57 -3.4
4,815,418 + AO356_21470 0.73 -3.3
4,816,072 - AO356_21475 0.43 +1.1
4,816,138 - AO356_21475 0.52 -0.7
4,816,215 + AO356_21475 0.62 -0.6
4,816,216 - AO356_21475 0.62 -0.6
4,816,216 - AO356_21475 0.62 -0.6
4,816,399 + AO356_21475 0.85 +0.3
4,816,503 + +0.0
4,816,503 + -0.7
4,816,572 - +1.1

Or see this region's nucleotide sequence