Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15545

Experiment: L-Arginine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_15540 and AO356_15545 are separated by 73 nucleotidesAO356_15545 and AO356_15550 are separated by 105 nucleotidesAO356_15550 and AO356_15555 overlap by 4 nucleotides AO356_15540: AO356_15540 - histone deacetylase superfamily protein, at 3,518,187 to 3,519,107 _15540 AO356_15545: AO356_15545 - GNAT family acetyltransferase, at 3,519,181 to 3,519,750 _15545 AO356_15550: AO356_15550 - palmitoyl-CoA hydrolase, at 3,519,856 to 3,520,725 _15550 AO356_15555: AO356_15555 - HAD family hydrolase, at 3,520,722 to 3,521,315 _15555 Position (kb) 3519 3520Strain fitness (log2 ratio) -1 0 1 2at 3518.275 kb on + strandat 3518.276 kb on - strandat 3518.276 kb on - strandat 3518.419 kb on + strand, within AO356_15540at 3518.419 kb on + strand, within AO356_15540at 3518.419 kb on + strand, within AO356_15540at 3518.419 kb on + strandat 3518.420 kb on - strand, within AO356_15540at 3518.420 kb on - strand, within AO356_15540at 3518.440 kb on + strand, within AO356_15540at 3518.440 kb on + strand, within AO356_15540at 3518.440 kb on + strand, within AO356_15540at 3518.440 kb on + strand, within AO356_15540at 3518.455 kb on + strand, within AO356_15540at 3518.455 kb on + strand, within AO356_15540at 3518.455 kb on + strand, within AO356_15540at 3518.455 kb on + strand, within AO356_15540at 3518.456 kb on - strand, within AO356_15540at 3518.456 kb on - strand, within AO356_15540at 3518.485 kb on + strand, within AO356_15540at 3518.604 kb on + strand, within AO356_15540at 3518.605 kb on - strand, within AO356_15540at 3518.683 kb on + strand, within AO356_15540at 3518.738 kb on - strand, within AO356_15540at 3518.908 kb on + strand, within AO356_15540at 3518.908 kb on + strand, within AO356_15540at 3518.908 kb on + strand, within AO356_15540at 3518.909 kb on - strand, within AO356_15540at 3518.909 kb on - strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.920 kb on + strand, within AO356_15540at 3518.921 kb on - strand, within AO356_15540at 3518.921 kb on - strand, within AO356_15540at 3518.921 kb on - strand, within AO356_15540at 3518.921 kb on - strand, within AO356_15540at 3518.921 kb on - strand, within AO356_15540at 3518.921 kb on - strand, within AO356_15540at 3518.921 kb on - strand, within AO356_15540at 3519.076 kb on + strandat 3519.076 kb on + strandat 3519.076 kb on + strandat 3519.076 kb on + strandat 3519.076 kb on + strandat 3519.077 kb on - strandat 3519.077 kb on - strandat 3519.077 kb on - strandat 3519.077 kb on - strandat 3519.077 kb on - strandat 3519.077 kb on - strandat 3519.088 kb on + strandat 3519.089 kb on - strandat 3519.089 kb on - strandat 3519.119 kb on + strandat 3519.141 kb on - strandat 3519.151 kb on + strandat 3519.151 kb on + strandat 3519.151 kb on + strandat 3519.152 kb on - strandat 3519.152 kb on - strandat 3519.290 kb on - strand, within AO356_15545at 3519.290 kb on - strand, within AO356_15545at 3519.508 kb on + strand, within AO356_15545at 3519.509 kb on - strand, within AO356_15545at 3519.509 kb on - strand, within AO356_15545at 3519.706 kb on + strandat 3519.707 kb on - strandat 3519.765 kb on + strandat 3519.765 kb on + strandat 3519.765 kb on + strandat 3519.818 kb on - strandat 3520.043 kb on - strand, within AO356_15550at 3520.082 kb on - strand, within AO356_15550at 3520.361 kb on - strand, within AO356_15550at 3520.391 kb on - strand, within AO356_15550at 3520.391 kb on - strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.440 kb on + strand, within AO356_15550at 3520.441 kb on - strand, within AO356_15550at 3520.441 kb on - strand, within AO356_15550at 3520.441 kb on - strand, within AO356_15550at 3520.441 kb on - strand, within AO356_15550at 3520.441 kb on - strand, within AO356_15550at 3520.441 kb on - strand, within AO356_15550at 3520.441 kb on - strand, within AO356_15550at 3520.444 kb on + strand, within AO356_15550at 3520.445 kb on - strand, within AO356_15550at 3520.445 kb on - strand, within AO356_15550at 3520.445 kb on - strand, within AO356_15550at 3520.445 kb on - strand, within AO356_15550at 3520.456 kb on + strand, within AO356_15550at 3520.457 kb on - strand, within AO356_15550at 3520.524 kb on + strand, within AO356_15550at 3520.525 kb on - strand, within AO356_15550at 3520.525 kb on - strand, within AO356_15550at 3520.525 kb on - strand, within AO356_15550at 3520.525 kb on - strand, within AO356_15550at 3520.595 kb on - strand, within AO356_15550at 3520.595 kb on - strand, within AO356_15550at 3520.595 kb on - strand, within AO356_15550at 3520.595 kb on - strand, within AO356_15550at 3520.595 kb on - strand, within AO356_15550at 3520.595 kb on - strand, within AO356_15550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
remove
3,518,275 + -0.3
3,518,276 - +1.5
3,518,276 - -0.1
3,518,419 + AO356_15540 0.25 +0.8
3,518,419 + AO356_15540 0.25 -0.4
3,518,419 + AO356_15540 0.25 +0.4
3,518,419 + +1.6
3,518,420 - AO356_15540 0.25 +0.5
3,518,420 - AO356_15540 0.25 +1.0
3,518,440 + AO356_15540 0.27 +0.1
3,518,440 + AO356_15540 0.27 +0.2
3,518,440 + AO356_15540 0.27 -1.4
3,518,440 + AO356_15540 0.27 +0.0
3,518,455 + AO356_15540 0.29 +0.5
3,518,455 + AO356_15540 0.29 +0.2
3,518,455 + AO356_15540 0.29 -0.0
3,518,455 + AO356_15540 0.29 -1.3
3,518,456 - AO356_15540 0.29 -1.7
3,518,456 - AO356_15540 0.29 -0.4
3,518,485 + AO356_15540 0.32 +0.8
3,518,604 + AO356_15540 0.45 -0.2
3,518,605 - AO356_15540 0.45 -0.0
3,518,683 + AO356_15540 0.54 -0.8
3,518,738 - AO356_15540 0.60 -0.4
3,518,908 + AO356_15540 0.78 -0.2
3,518,908 + AO356_15540 0.78 -0.5
3,518,908 + AO356_15540 0.78 -0.3
3,518,909 - AO356_15540 0.78 +0.6
3,518,909 - AO356_15540 0.78 -0.5
3,518,920 + AO356_15540 0.80 -0.1
3,518,920 + AO356_15540 0.80 -0.3
3,518,920 + AO356_15540 0.80 +0.8
3,518,920 + AO356_15540 0.80 -0.1
3,518,920 + AO356_15540 0.80 +1.2
3,518,920 + AO356_15540 0.80 +0.5
3,518,920 + AO356_15540 0.80 +0.3
3,518,920 + AO356_15540 0.80 -0.1
3,518,920 + AO356_15540 0.80 +0.1
3,518,920 + AO356_15540 0.80 +0.3
3,518,921 - AO356_15540 0.80 +0.1
3,518,921 - AO356_15540 0.80 +0.6
3,518,921 - AO356_15540 0.80 +0.7
3,518,921 - AO356_15540 0.80 -0.9
3,518,921 - AO356_15540 0.80 -0.2
3,518,921 - AO356_15540 0.80 -0.4
3,518,921 - AO356_15540 0.80 +0.1
3,519,076 + +0.8
3,519,076 + +0.3
3,519,076 + +0.2
3,519,076 + +0.3
3,519,076 + -0.1
3,519,077 - +0.3
3,519,077 - -0.4
3,519,077 - +0.3
3,519,077 - +0.5
3,519,077 - -0.0
3,519,077 - -0.9
3,519,088 + +0.3
3,519,089 - +0.6
3,519,089 - +0.5
3,519,119 + +0.6
3,519,141 - +0.5
3,519,151 + +0.9
3,519,151 + +0.7
3,519,151 + -0.9
3,519,152 - -0.1
3,519,152 - +1.5
3,519,290 - AO356_15545 0.19 +0.6
3,519,290 - AO356_15545 0.19 -0.4
3,519,508 + AO356_15545 0.57 +1.8
3,519,509 - AO356_15545 0.58 -0.9
3,519,509 - AO356_15545 0.58 +1.0
3,519,706 + +0.1
3,519,707 - -0.1
3,519,765 + +0.9
3,519,765 + +0.9
3,519,765 + +0.2
3,519,818 - -0.1
3,520,043 - AO356_15550 0.21 -0.2
3,520,082 - AO356_15550 0.26 -0.3
3,520,361 - AO356_15550 0.58 +0.2
3,520,391 - AO356_15550 0.61 +1.4
3,520,391 - AO356_15550 0.61 -0.0
3,520,440 + AO356_15550 0.67 -1.0
3,520,440 + AO356_15550 0.67 -0.9
3,520,440 + AO356_15550 0.67 -0.4
3,520,440 + AO356_15550 0.67 +0.7
3,520,440 + AO356_15550 0.67 +0.5
3,520,440 + AO356_15550 0.67 +0.6
3,520,440 + AO356_15550 0.67 -1.4
3,520,440 + AO356_15550 0.67 +0.7
3,520,440 + AO356_15550 0.67 +0.6
3,520,440 + AO356_15550 0.67 -0.6
3,520,440 + AO356_15550 0.67 +0.5
3,520,440 + AO356_15550 0.67 -0.0
3,520,440 + AO356_15550 0.67 +0.6
3,520,440 + AO356_15550 0.67 +0.3
3,520,440 + AO356_15550 0.67 -0.3
3,520,440 + AO356_15550 0.67 -0.7
3,520,440 + AO356_15550 0.67 +0.9
3,520,441 - AO356_15550 0.67 +0.7
3,520,441 - AO356_15550 0.67 -0.4
3,520,441 - AO356_15550 0.67 +0.2
3,520,441 - AO356_15550 0.67 +0.2
3,520,441 - AO356_15550 0.67 -0.4
3,520,441 - AO356_15550 0.67 -0.9
3,520,441 - AO356_15550 0.67 +0.3
3,520,444 + AO356_15550 0.68 -0.1
3,520,445 - AO356_15550 0.68 -0.7
3,520,445 - AO356_15550 0.68 +0.9
3,520,445 - AO356_15550 0.68 -1.0
3,520,445 - AO356_15550 0.68 +0.4
3,520,456 + AO356_15550 0.69 -0.7
3,520,457 - AO356_15550 0.69 +0.2
3,520,524 + AO356_15550 0.77 +0.5
3,520,525 - AO356_15550 0.77 -0.3
3,520,525 - AO356_15550 0.77 +0.2
3,520,525 - AO356_15550 0.77 +0.1
3,520,525 - AO356_15550 0.77 -0.1
3,520,595 - AO356_15550 0.85 -0.1
3,520,595 - AO356_15550 0.85 -0.8
3,520,595 - AO356_15550 0.85 +0.4
3,520,595 - AO356_15550 0.85 +0.4
3,520,595 - AO356_15550 0.85 +0.2
3,520,595 - AO356_15550 0.85 +0.6

Or see this region's nucleotide sequence