Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21500 and SM_b21501 are separated by 55 nucleotides SM_b21501 and SM_b21502 overlap by 4 nucleotides SM_b21502 and SM_b21503 are separated by 231 nucleotides
SM_b21500: SM_b21500 - glycosyltransferase, at 1,425,015 to 1,426,058
_b21500
SM_b21501: SM_b21501 - hypothetical protein, at 1,426,114 to 1,426,476
_b21501
SM_b21502: SM_b21502 - glycosyltransferase, at 1,426,473 to 1,427,642
_b21502
SM_b21503: SM_b21503 - glycosyltransferase, at 1,427,874 to 1,429,217
_b21503
Position (kb)
1426
1427
1428 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1425.547 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500 at 1426.051 kb on - strand at 1426.214 kb on - strand, within SM_b21501 at 1426.281 kb on + strand, within SM_b21501 at 1426.281 kb on + strand, within SM_b21501 at 1426.281 kb on + strand, within SM_b21501 at 1426.418 kb on + strand, within SM_b21501 at 1426.529 kb on + strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.531 kb on + strand at 1426.870 kb on + strand, within SM_b21502 at 1426.936 kb on + strand, within SM_b21502 at 1426.937 kb on - strand, within SM_b21502 at 1426.937 kb on - strand, within SM_b21502 at 1426.996 kb on + strand, within SM_b21502 at 1426.996 kb on + strand, within SM_b21502 at 1426.997 kb on - strand, within SM_b21502 at 1426.997 kb on - strand, within SM_b21502 at 1427.016 kb on + strand, within SM_b21502 at 1427.095 kb on + strand, within SM_b21502 at 1427.095 kb on + strand, within SM_b21502 at 1427.221 kb on + strand, within SM_b21502 at 1427.221 kb on + strand, within SM_b21502 at 1427.278 kb on - strand, within SM_b21502 at 1427.338 kb on + strand, within SM_b21502 at 1427.338 kb on + strand, within SM_b21502 at 1427.339 kb on - strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.344 kb on - strand, within SM_b21502 at 1427.344 kb on - strand, within SM_b21502 at 1427.344 kb on - strand, within SM_b21502 at 1427.357 kb on + strand, within SM_b21502 at 1427.358 kb on - strand, within SM_b21502 at 1427.358 kb on - strand, within SM_b21502 at 1427.384 kb on + strand, within SM_b21502 at 1427.384 kb on + strand, within SM_b21502 at 1427.384 kb on + strand, within SM_b21502 at 1427.384 kb on + strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.742 kb on - strand at 1428.011 kb on + strand, within SM_b21503 at 1428.278 kb on - strand, within SM_b21503 at 1428.511 kb on + strand, within SM_b21503 at 1428.616 kb on + strand, within SM_b21503
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 1,425,547 + SM_b21500 0.51 +0.8 1,425,596 + SM_b21500 0.56 +0.1 1,425,596 + SM_b21500 0.56 +0.1 1,425,814 + SM_b21500 0.77 -0.7 1,425,814 + SM_b21500 0.77 +0.2 1,425,815 - SM_b21500 0.77 -0.2 1,425,815 - SM_b21500 0.77 -0.9 1,426,051 - +0.2 1,426,214 - SM_b21501 0.28 -0.7 1,426,281 + SM_b21501 0.46 +0.3 1,426,281 + SM_b21501 0.46 -0.3 1,426,281 + SM_b21501 0.46 +0.5 1,426,418 + SM_b21501 0.84 -0.2 1,426,529 + +0.4 1,426,530 - +0.9 1,426,530 - +0.5 1,426,530 - +0.6 1,426,530 - +0.0 1,426,530 - +0.3 1,426,531 + +0.1 1,426,870 + SM_b21502 0.34 +1.0 1,426,936 + SM_b21502 0.40 +0.2 1,426,937 - SM_b21502 0.40 +0.3 1,426,937 - SM_b21502 0.40 +0.8 1,426,996 + SM_b21502 0.45 +0.2 1,426,996 + SM_b21502 0.45 +0.5 1,426,997 - SM_b21502 0.45 +0.1 1,426,997 - SM_b21502 0.45 +0.3 1,427,016 + SM_b21502 0.46 -0.9 1,427,095 + SM_b21502 0.53 +0.4 1,427,095 + SM_b21502 0.53 -0.1 1,427,221 + SM_b21502 0.64 -0.0 1,427,221 + SM_b21502 0.64 -0.0 1,427,278 - SM_b21502 0.69 -0.0 1,427,338 + SM_b21502 0.74 +0.1 1,427,338 + SM_b21502 0.74 -0.5 1,427,339 - SM_b21502 0.74 -0.0 1,427,343 + SM_b21502 0.74 -0.1 1,427,343 + SM_b21502 0.74 -0.1 1,427,343 + SM_b21502 0.74 +0.1 1,427,343 + SM_b21502 0.74 -0.1 1,427,343 + SM_b21502 0.74 +0.4 1,427,343 + SM_b21502 0.74 -0.3 1,427,344 - SM_b21502 0.74 -0.2 1,427,344 - SM_b21502 0.74 -0.1 1,427,344 - SM_b21502 0.74 +0.4 1,427,357 + SM_b21502 0.76 -1.2 1,427,358 - SM_b21502 0.76 +0.9 1,427,358 - SM_b21502 0.76 +0.2 1,427,384 + SM_b21502 0.78 -0.1 1,427,384 + SM_b21502 0.78 -0.5 1,427,384 + SM_b21502 0.78 +0.3 1,427,384 + SM_b21502 0.78 -3.2 1,427,385 - SM_b21502 0.78 -0.1 1,427,385 - SM_b21502 0.78 +1.5 1,427,385 - SM_b21502 0.78 +0.7 1,427,385 - SM_b21502 0.78 +0.4 1,427,385 - SM_b21502 0.78 +1.0 1,427,385 - SM_b21502 0.78 +0.4 1,427,742 - +0.1 1,428,011 + SM_b21503 0.10 +0.5 1,428,278 - SM_b21503 0.30 +1.3 1,428,511 + SM_b21503 0.47 +0.3 1,428,616 + SM_b21503 0.55 -1.1
Or see this region's nucleotide sequence