Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20961 and SM_b20962 are separated by 358 nucleotides SM_b20962 and SM_b20963 are separated by 34 nucleotides SM_b20963 and SM_b20964 are separated by 104 nucleotides
SM_b20961: SM_b20961 - protein tyrosine kinase MPA1 family protein, at 1,188,398 to 1,190,758
_b20961
SM_b20962: SM_b20962 - phoshomethylpyrimidine kinase, at 1,191,117 to 1,191,917
_b20962
SM_b20963: SM_b20963 - transcriptional regulator, at 1,191,952 to 1,192,257
_b20963
SM_b20964: SM_b20964 - Ahp/CTSA family anti-oxidant protein, at 1,192,362 to 1,193,021
_b20964
Position (kb)
1191
1192 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1190.904 kb on + strand at 1191.168 kb on + strand at 1191.168 kb on + strand at 1191.208 kb on + strand, within SM_b20962 at 1191.209 kb on - strand, within SM_b20962 at 1191.209 kb on - strand, within SM_b20962 at 1191.209 kb on - strand, within SM_b20962 at 1191.962 kb on + strand at 1191.962 kb on + strand at 1191.963 kb on - strand at 1192.150 kb on - strand, within SM_b20963 at 1192.153 kb on + strand, within SM_b20963 at 1192.154 kb on - strand, within SM_b20963 at 1192.163 kb on + strand, within SM_b20963 at 1192.201 kb on - strand, within SM_b20963 at 1192.201 kb on - strand, within SM_b20963 at 1192.201 kb on - strand, within SM_b20963 at 1192.232 kb on + strand at 1192.233 kb on - strand at 1192.254 kb on - strand at 1192.254 kb on - strand at 1192.254 kb on - strand at 1192.561 kb on + strand, within SM_b20964 at 1192.562 kb on - strand, within SM_b20964 at 1192.562 kb on - strand, within SM_b20964 at 1192.761 kb on + strand, within SM_b20964 at 1192.762 kb on - strand, within SM_b20964 at 1192.762 kb on - strand, within SM_b20964 at 1192.837 kb on + strand, within SM_b20964
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 1,190,904 + -2.2 1,191,168 + +1.3 1,191,168 + +0.6 1,191,208 + SM_b20962 0.11 +0.8 1,191,209 - SM_b20962 0.11 +0.4 1,191,209 - SM_b20962 0.11 +0.8 1,191,209 - SM_b20962 0.11 +0.2 1,191,962 + +0.1 1,191,962 + -0.4 1,191,963 - +0.2 1,192,150 - SM_b20963 0.65 +0.1 1,192,153 + SM_b20963 0.66 -0.1 1,192,154 - SM_b20963 0.66 -0.5 1,192,163 + SM_b20963 0.69 +2.0 1,192,201 - SM_b20963 0.81 +1.4 1,192,201 - SM_b20963 0.81 +0.0 1,192,201 - SM_b20963 0.81 +0.1 1,192,232 + -0.2 1,192,233 - +0.1 1,192,254 - -0.4 1,192,254 - +1.0 1,192,254 - +0.6 1,192,561 + SM_b20964 0.30 -0.1 1,192,562 - SM_b20964 0.30 +0.9 1,192,562 - SM_b20964 0.30 +0.2 1,192,761 + SM_b20964 0.60 -0.3 1,192,762 - SM_b20964 0.61 -1.5 1,192,762 - SM_b20964 0.61 +0.6 1,192,837 + SM_b20964 0.72 +0.3
Or see this region's nucleotide sequence