Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20962

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20961 and SM_b20962 are separated by 358 nucleotidesSM_b20962 and SM_b20963 are separated by 34 nucleotidesSM_b20963 and SM_b20964 are separated by 104 nucleotides SM_b20961: SM_b20961 - protein tyrosine kinase MPA1 family protein, at 1,188,398 to 1,190,758 _b20961 SM_b20962: SM_b20962 - phoshomethylpyrimidine kinase, at 1,191,117 to 1,191,917 _b20962 SM_b20963: SM_b20963 - transcriptional regulator, at 1,191,952 to 1,192,257 _b20963 SM_b20964: SM_b20964 - Ahp/CTSA family anti-oxidant protein, at 1,192,362 to 1,193,021 _b20964 Position (kb) 1191 1192Strain fitness (log2 ratio) -2 -1 0 1 2at 1190.904 kb on + strandat 1191.168 kb on + strandat 1191.168 kb on + strandat 1191.208 kb on + strand, within SM_b20962at 1191.209 kb on - strand, within SM_b20962at 1191.209 kb on - strand, within SM_b20962at 1191.209 kb on - strand, within SM_b20962at 1191.962 kb on + strandat 1191.962 kb on + strandat 1191.963 kb on - strandat 1192.150 kb on - strand, within SM_b20963at 1192.153 kb on + strand, within SM_b20963at 1192.154 kb on - strand, within SM_b20963at 1192.163 kb on + strand, within SM_b20963at 1192.201 kb on - strand, within SM_b20963at 1192.201 kb on - strand, within SM_b20963at 1192.201 kb on - strand, within SM_b20963at 1192.232 kb on + strandat 1192.233 kb on - strandat 1192.254 kb on - strandat 1192.254 kb on - strandat 1192.254 kb on - strandat 1192.561 kb on + strand, within SM_b20964at 1192.562 kb on - strand, within SM_b20964at 1192.562 kb on - strand, within SM_b20964at 1192.761 kb on + strand, within SM_b20964at 1192.762 kb on - strand, within SM_b20964at 1192.762 kb on - strand, within SM_b20964at 1192.837 kb on + strand, within SM_b20964

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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1,190,904 + -2.2
1,191,168 + +1.3
1,191,168 + +0.6
1,191,208 + SM_b20962 0.11 +0.8
1,191,209 - SM_b20962 0.11 +0.4
1,191,209 - SM_b20962 0.11 +0.8
1,191,209 - SM_b20962 0.11 +0.2
1,191,962 + +0.1
1,191,962 + -0.4
1,191,963 - +0.2
1,192,150 - SM_b20963 0.65 +0.1
1,192,153 + SM_b20963 0.66 -0.1
1,192,154 - SM_b20963 0.66 -0.5
1,192,163 + SM_b20963 0.69 +2.0
1,192,201 - SM_b20963 0.81 +1.4
1,192,201 - SM_b20963 0.81 +0.0
1,192,201 - SM_b20963 0.81 +0.1
1,192,232 + -0.2
1,192,233 - +0.1
1,192,254 - -0.4
1,192,254 - +1.0
1,192,254 - +0.6
1,192,561 + SM_b20964 0.30 -0.1
1,192,562 - SM_b20964 0.30 +0.9
1,192,562 - SM_b20964 0.30 +0.2
1,192,761 + SM_b20964 0.60 -0.3
1,192,762 - SM_b20964 0.61 -1.5
1,192,762 - SM_b20964 0.61 +0.6
1,192,837 + SM_b20964 0.72 +0.3

Or see this region's nucleotide sequence