Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26585

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26575 and RR42_RS26580 are separated by 8 nucleotidesRR42_RS26580 and RR42_RS26585 are separated by 497 nucleotidesRR42_RS26585 and RR42_RS26590 are separated by 42 nucleotidesRR42_RS26590 and RR42_RS26595 are separated by 142 nucleotides RR42_RS26575: RR42_RS26575 - LysR family transcriptional regulator, at 1,316,370 to 1,317,272 _RS26575 RR42_RS26580: RR42_RS26580 - hypothetical protein, at 1,317,281 to 1,317,460 _RS26580 RR42_RS26585: RR42_RS26585 - TonB-dependent receptor, at 1,317,958 to 1,320,315 _RS26585 RR42_RS26590: RR42_RS26590 - hypothetical protein, at 1,320,358 to 1,320,732 _RS26590 RR42_RS26595: RR42_RS26595 - cell division protein Fic, at 1,320,875 to 1,322,254 _RS26595 Position (kb) 1317 1318 1319 1320 1321Strain fitness (log2 ratio) -2 -1 0 1 2at 1317.147 kb on + strand, within RR42_RS26575at 1317.147 kb on + strand, within RR42_RS26575at 1317.147 kb on + strand, within RR42_RS26575at 1317.147 kb on + strand, within RR42_RS26575at 1317.148 kb on - strand, within RR42_RS26575at 1317.148 kb on - strand, within RR42_RS26575at 1317.148 kb on - strand, within RR42_RS26575at 1317.148 kb on - strand, within RR42_RS26575at 1317.196 kb on - strandat 1317.307 kb on + strand, within RR42_RS26580at 1317.923 kb on - strandat 1317.937 kb on + strandat 1317.968 kb on + strandat 1317.969 kb on - strandat 1317.983 kb on + strandat 1317.983 kb on + strandat 1318.019 kb on + strandat 1318.019 kb on + strandat 1318.019 kb on + strandat 1318.019 kb on + strandat 1318.020 kb on - strandat 1318.072 kb on + strandat 1318.072 kb on + strandat 1318.080 kb on - strandat 1318.080 kb on - strandat 1318.124 kb on + strandat 1318.125 kb on - strandat 1318.125 kb on - strandat 1318.164 kb on - strandat 1318.176 kb on + strandat 1318.176 kb on + strandat 1318.177 kb on - strandat 1318.179 kb on - strandat 1318.297 kb on - strand, within RR42_RS26585at 1318.297 kb on - strand, within RR42_RS26585at 1318.304 kb on + strand, within RR42_RS26585at 1318.304 kb on + strand, within RR42_RS26585at 1318.304 kb on + strand, within RR42_RS26585at 1318.304 kb on + strand, within RR42_RS26585at 1318.304 kb on + strand, within RR42_RS26585at 1318.304 kb on + strand, within RR42_RS26585at 1318.304 kb on + strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.305 kb on - strand, within RR42_RS26585at 1318.337 kb on + strand, within RR42_RS26585at 1318.337 kb on + strand, within RR42_RS26585at 1318.337 kb on + strand, within RR42_RS26585at 1318.337 kb on + strand, within RR42_RS26585at 1318.338 kb on - strand, within RR42_RS26585at 1318.338 kb on - strand, within RR42_RS26585at 1318.338 kb on - strand, within RR42_RS26585at 1318.338 kb on - strand, within RR42_RS26585at 1318.438 kb on - strand, within RR42_RS26585at 1318.502 kb on + strand, within RR42_RS26585at 1318.637 kb on + strand, within RR42_RS26585at 1318.799 kb on + strand, within RR42_RS26585at 1318.799 kb on + strand, within RR42_RS26585at 1318.800 kb on - strand, within RR42_RS26585at 1318.970 kb on + strand, within RR42_RS26585at 1318.971 kb on - strand, within RR42_RS26585at 1318.971 kb on - strand, within RR42_RS26585at 1319.000 kb on + strand, within RR42_RS26585at 1319.135 kb on + strand, within RR42_RS26585at 1319.135 kb on + strand, within RR42_RS26585at 1319.171 kb on + strand, within RR42_RS26585at 1319.172 kb on - strand, within RR42_RS26585at 1319.172 kb on - strand, within RR42_RS26585at 1319.174 kb on + strand, within RR42_RS26585at 1319.174 kb on + strand, within RR42_RS26585at 1319.175 kb on - strand, within RR42_RS26585at 1319.303 kb on + strand, within RR42_RS26585at 1319.345 kb on + strand, within RR42_RS26585at 1319.376 kb on - strand, within RR42_RS26585at 1319.423 kb on + strand, within RR42_RS26585at 1319.453 kb on + strand, within RR42_RS26585at 1319.487 kb on + strand, within RR42_RS26585at 1319.488 kb on - strand, within RR42_RS26585at 1319.513 kb on - strand, within RR42_RS26585at 1319.549 kb on + strand, within RR42_RS26585at 1319.732 kb on + strand, within RR42_RS26585at 1319.822 kb on + strand, within RR42_RS26585at 1319.822 kb on + strand, within RR42_RS26585at 1319.823 kb on - strand, within RR42_RS26585at 1319.823 kb on - strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.858 kb on + strand, within RR42_RS26585at 1319.859 kb on - strand, within RR42_RS26585at 1319.859 kb on - strand, within RR42_RS26585at 1319.859 kb on - strand, within RR42_RS26585at 1319.859 kb on - strand, within RR42_RS26585at 1319.859 kb on - strand, within RR42_RS26585at 1319.859 kb on - strand, within RR42_RS26585at 1319.966 kb on + strand, within RR42_RS26585at 1319.967 kb on - strand, within RR42_RS26585at 1320.036 kb on + strand, within RR42_RS26585at 1320.068 kb on + strand, within RR42_RS26585at 1320.068 kb on + strand, within RR42_RS26585at 1320.069 kb on - strand, within RR42_RS26585at 1320.253 kb on + strandat 1320.284 kb on - strandat 1320.359 kb on + strandat 1320.377 kb on - strandat 1320.536 kb on + strand, within RR42_RS26590at 1320.736 kb on + strandat 1320.737 kb on - strandat 1320.737 kb on - strandat 1320.865 kb on - strandat 1320.948 kb on + strandat 1320.948 kb on + strandat 1320.948 kb on + strandat 1320.949 kb on - strandat 1320.949 kb on - strandat 1321.004 kb on + strandat 1321.004 kb on + strandat 1321.004 kb on + strandat 1321.005 kb on - strandat 1321.005 kb on - strandat 1321.005 kb on - strandat 1321.085 kb on + strand, within RR42_RS26595at 1321.174 kb on - strand, within RR42_RS26595at 1321.195 kb on - strand, within RR42_RS26595at 1321.195 kb on - strand, within RR42_RS26595at 1321.207 kb on - strand, within RR42_RS26595at 1321.207 kb on - strand, within RR42_RS26595at 1321.207 kb on - strand, within RR42_RS26595at 1321.242 kb on + strand, within RR42_RS26595at 1321.267 kb on - strand, within RR42_RS26595at 1321.281 kb on - strand, within RR42_RS26595at 1321.294 kb on + strand, within RR42_RS26595at 1321.294 kb on + strand, within RR42_RS26595at 1321.295 kb on - strand, within RR42_RS26595at 1321.295 kb on - strand, within RR42_RS26595at 1321.295 kb on - strand, within RR42_RS26595at 1321.304 kb on + strand, within RR42_RS26595at 1321.304 kb on + strand, within RR42_RS26595at 1321.305 kb on - strand, within RR42_RS26595at 1321.305 kb on - strand, within RR42_RS26595

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,317,147 + RR42_RS26575 0.86 +0.3
1,317,147 + RR42_RS26575 0.86 -0.6
1,317,147 + RR42_RS26575 0.86 +2.1
1,317,147 + RR42_RS26575 0.86 +0.1
1,317,148 - RR42_RS26575 0.86 -0.5
1,317,148 - RR42_RS26575 0.86 -0.6
1,317,148 - RR42_RS26575 0.86 -0.1
1,317,148 - RR42_RS26575 0.86 +1.0
1,317,196 - +0.3
1,317,307 + RR42_RS26580 0.14 -0.8
1,317,923 - -0.4
1,317,937 + +0.6
1,317,968 + -0.9
1,317,969 - -0.6
1,317,983 + +0.3
1,317,983 + +0.5
1,318,019 + +0.6
1,318,019 + -0.3
1,318,019 + +0.1
1,318,019 + -0.6
1,318,020 - -0.1
1,318,072 + -1.3
1,318,072 + -0.4
1,318,080 - -0.8
1,318,080 - -0.1
1,318,124 + -0.1
1,318,125 - +0.0
1,318,125 - -0.6
1,318,164 - +0.4
1,318,176 + -0.5
1,318,176 + -0.4
1,318,177 - +0.1
1,318,179 - +0.3
1,318,297 - RR42_RS26585 0.14 +0.7
1,318,297 - RR42_RS26585 0.14 +0.6
1,318,304 + RR42_RS26585 0.15 +0.5
1,318,304 + RR42_RS26585 0.15 -1.4
1,318,304 + RR42_RS26585 0.15 -0.3
1,318,304 + RR42_RS26585 0.15 +0.3
1,318,304 + RR42_RS26585 0.15 +0.7
1,318,304 + RR42_RS26585 0.15 -1.6
1,318,304 + RR42_RS26585 0.15 +1.0
1,318,305 - RR42_RS26585 0.15 +0.3
1,318,305 - RR42_RS26585 0.15 -1.9
1,318,305 - RR42_RS26585 0.15 -0.6
1,318,305 - RR42_RS26585 0.15 +0.3
1,318,305 - RR42_RS26585 0.15 +1.5
1,318,305 - RR42_RS26585 0.15 +0.3
1,318,305 - RR42_RS26585 0.15 -0.5
1,318,305 - RR42_RS26585 0.15 +0.8
1,318,305 - RR42_RS26585 0.15 -1.6
1,318,305 - RR42_RS26585 0.15 -0.6
1,318,305 - RR42_RS26585 0.15 +0.1
1,318,337 + RR42_RS26585 0.16 +0.6
1,318,337 + RR42_RS26585 0.16 -0.3
1,318,337 + RR42_RS26585 0.16 +0.5
1,318,337 + RR42_RS26585 0.16 +0.4
1,318,338 - RR42_RS26585 0.16 +0.4
1,318,338 - RR42_RS26585 0.16 +0.4
1,318,338 - RR42_RS26585 0.16 +0.6
1,318,338 - RR42_RS26585 0.16 -0.1
1,318,438 - RR42_RS26585 0.20 +0.1
1,318,502 + RR42_RS26585 0.23 +0.9
1,318,637 + RR42_RS26585 0.29 -0.0
1,318,799 + RR42_RS26585 0.36 -0.1
1,318,799 + RR42_RS26585 0.36 -0.8
1,318,800 - RR42_RS26585 0.36 +0.3
1,318,970 + RR42_RS26585 0.43 -1.1
1,318,971 - RR42_RS26585 0.43 -1.0
1,318,971 - RR42_RS26585 0.43 -1.1
1,319,000 + RR42_RS26585 0.44 -0.1
1,319,135 + RR42_RS26585 0.50 +1.0
1,319,135 + RR42_RS26585 0.50 -0.6
1,319,171 + RR42_RS26585 0.51 -0.2
1,319,172 - RR42_RS26585 0.51 -0.4
1,319,172 - RR42_RS26585 0.51 -0.5
1,319,174 + RR42_RS26585 0.52 +1.1
1,319,174 + RR42_RS26585 0.52 -0.4
1,319,175 - RR42_RS26585 0.52 -0.3
1,319,303 + RR42_RS26585 0.57 +0.1
1,319,345 + RR42_RS26585 0.59 +1.0
1,319,376 - RR42_RS26585 0.60 +0.6
1,319,423 + RR42_RS26585 0.62 -1.3
1,319,453 + RR42_RS26585 0.63 -0.8
1,319,487 + RR42_RS26585 0.65 -0.1
1,319,488 - RR42_RS26585 0.65 -0.9
1,319,513 - RR42_RS26585 0.66 -1.4
1,319,549 + RR42_RS26585 0.67 +0.5
1,319,732 + RR42_RS26585 0.75 -0.2
1,319,822 + RR42_RS26585 0.79 -1.4
1,319,822 + RR42_RS26585 0.79 +1.1
1,319,823 - RR42_RS26585 0.79 -0.7
1,319,823 - RR42_RS26585 0.79 +0.2
1,319,858 + RR42_RS26585 0.81 +0.0
1,319,858 + RR42_RS26585 0.81 +0.1
1,319,858 + RR42_RS26585 0.81 +0.8
1,319,858 + RR42_RS26585 0.81 -2.4
1,319,858 + RR42_RS26585 0.81 -0.0
1,319,858 + RR42_RS26585 0.81 +1.5
1,319,858 + RR42_RS26585 0.81 +0.5
1,319,858 + RR42_RS26585 0.81 +1.4
1,319,858 + RR42_RS26585 0.81 -0.4
1,319,858 + RR42_RS26585 0.81 +0.6
1,319,859 - RR42_RS26585 0.81 +0.3
1,319,859 - RR42_RS26585 0.81 -0.0
1,319,859 - RR42_RS26585 0.81 +0.0
1,319,859 - RR42_RS26585 0.81 -0.7
1,319,859 - RR42_RS26585 0.81 -0.1
1,319,859 - RR42_RS26585 0.81 +0.5
1,319,966 + RR42_RS26585 0.85 +1.2
1,319,967 - RR42_RS26585 0.85 +0.3
1,320,036 + RR42_RS26585 0.88 -0.1
1,320,068 + RR42_RS26585 0.89 +0.5
1,320,068 + RR42_RS26585 0.89 +0.7
1,320,069 - RR42_RS26585 0.90 +0.1
1,320,253 + +1.0
1,320,284 - -1.0
1,320,359 + -0.2
1,320,377 - -2.5
1,320,536 + RR42_RS26590 0.47 -1.0
1,320,736 + -0.5
1,320,737 - +0.1
1,320,737 - -0.3
1,320,865 - +0.5
1,320,948 + +0.7
1,320,948 + +0.4
1,320,948 + -0.1
1,320,949 - +0.9
1,320,949 - +0.2
1,321,004 + +0.1
1,321,004 + +0.7
1,321,004 + -1.2
1,321,005 - -0.8
1,321,005 - +0.5
1,321,005 - -1.6
1,321,085 + RR42_RS26595 0.15 +0.1
1,321,174 - RR42_RS26595 0.22 -0.9
1,321,195 - RR42_RS26595 0.23 +0.4
1,321,195 - RR42_RS26595 0.23 +0.2
1,321,207 - RR42_RS26595 0.24 -0.8
1,321,207 - RR42_RS26595 0.24 +0.1
1,321,207 - RR42_RS26595 0.24 -0.1
1,321,242 + RR42_RS26595 0.27 +0.4
1,321,267 - RR42_RS26595 0.28 +0.4
1,321,281 - RR42_RS26595 0.29 -1.7
1,321,294 + RR42_RS26595 0.30 -2.7
1,321,294 + RR42_RS26595 0.30 +0.4
1,321,295 - RR42_RS26595 0.30 +0.1
1,321,295 - RR42_RS26595 0.30 +0.6
1,321,295 - RR42_RS26595 0.30 +0.5
1,321,304 + RR42_RS26595 0.31 +0.6
1,321,304 + RR42_RS26595 0.31 +0.7
1,321,305 - RR42_RS26595 0.31 -0.4
1,321,305 - RR42_RS26595 0.31 +0.2

Or see this region's nucleotide sequence