Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22450 and RR42_RS22455 are separated by 0 nucleotides RR42_RS22455 and RR42_RS22460 are separated by 146 nucleotides RR42_RS22460 and RR42_RS22465 are separated by 67 nucleotides
RR42_RS22450: RR42_RS22450 - phosphonopyruvate decarboxylase, at 372,781 to 373,962
_RS22450
RR42_RS22455: RR42_RS22455 - 2-aminoethylphosphonate aminotransferase, at 373,963 to 375,027
_RS22455
RR42_RS22460: RR42_RS22460 - ABC transporter, at 375,174 to 375,872
_RS22460
RR42_RS22465: RR42_RS22465 - membrane protein, at 375,940 to 377,994
_RS22465
Position (kb) 373
374
375
376 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 373.233 kb on + strand, within RR42_RS22450 at 373.233 kb on + strand, within RR42_RS22450 at 373.234 kb on - strand, within RR42_RS22450 at 373.234 kb on - strand, within RR42_RS22450 at 373.256 kb on - strand, within RR42_RS22450 at 373.416 kb on + strand, within RR42_RS22450 at 373.504 kb on + strand, within RR42_RS22450 at 373.504 kb on + strand, within RR42_RS22450 at 373.505 kb on - strand, within RR42_RS22450 at 373.505 kb on - strand, within RR42_RS22450 at 373.642 kb on + strand, within RR42_RS22450 at 373.642 kb on + strand, within RR42_RS22450 at 373.960 kb on + strand at 373.960 kb on + strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.961 kb on - strand at 373.970 kb on + strand at 373.970 kb on + strand at 373.971 kb on - strand at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.098 kb on + strand, within RR42_RS22455 at 374.099 kb on - strand, within RR42_RS22455 at 374.099 kb on - strand, within RR42_RS22455 at 374.099 kb on - strand, within RR42_RS22455 at 374.257 kb on + strand, within RR42_RS22455 at 374.438 kb on + strand, within RR42_RS22455 at 374.438 kb on + strand, within RR42_RS22455 at 374.438 kb on + strand, within RR42_RS22455 at 374.439 kb on - strand, within RR42_RS22455 at 374.439 kb on - strand, within RR42_RS22455 at 374.439 kb on - strand, within RR42_RS22455 at 374.605 kb on + strand, within RR42_RS22455 at 374.605 kb on + strand, within RR42_RS22455 at 374.606 kb on - strand, within RR42_RS22455 at 374.608 kb on + strand, within RR42_RS22455 at 374.608 kb on + strand, within RR42_RS22455 at 374.652 kb on + strand, within RR42_RS22455 at 374.652 kb on + strand, within RR42_RS22455 at 374.661 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.672 kb on + strand, within RR42_RS22455 at 374.673 kb on - strand, within RR42_RS22455 at 374.680 kb on + strand, within RR42_RS22455 at 374.680 kb on + strand, within RR42_RS22455 at 374.681 kb on - strand, within RR42_RS22455 at 374.681 kb on - strand, within RR42_RS22455 at 374.681 kb on - strand, within RR42_RS22455 at 374.683 kb on + strand, within RR42_RS22455 at 374.870 kb on - strand, within RR42_RS22455 at 374.914 kb on + strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.915 kb on - strand, within RR42_RS22455 at 374.933 kb on + strand at 374.970 kb on + strand at 375.026 kb on - strand at 375.050 kb on + strand at 375.101 kb on + strand at 375.101 kb on + strand at 375.102 kb on - strand at 375.102 kb on - strand at 375.102 kb on - strand at 375.102 kb on - strand at 375.102 kb on - strand at 375.107 kb on + strand at 375.107 kb on + strand at 375.108 kb on - strand at 375.108 kb on - strand at 375.260 kb on + strand, within RR42_RS22460 at 375.471 kb on + strand, within RR42_RS22460 at 375.472 kb on - strand, within RR42_RS22460 at 375.664 kb on + strand, within RR42_RS22460 at 375.664 kb on + strand, within RR42_RS22460 at 375.664 kb on + strand, within RR42_RS22460 at 375.665 kb on - strand, within RR42_RS22460 at 375.665 kb on - strand, within RR42_RS22460 at 375.761 kb on + strand, within RR42_RS22460 at 375.761 kb on + strand, within RR42_RS22460 at 375.762 kb on - strand, within RR42_RS22460 at 375.847 kb on - strand at 375.847 kb on - strand at 375.860 kb on + strand at 375.861 kb on - strand at 375.875 kb on + strand at 375.887 kb on + strand at 375.887 kb on + strand at 375.887 kb on + strand at 375.887 kb on + strand at 375.888 kb on - strand at 375.888 kb on - strand at 375.925 kb on + strand at 375.925 kb on + strand at 375.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 373,233 + RR42_RS22450 0.38 -0.9 373,233 + RR42_RS22450 0.38 -0.5 373,234 - RR42_RS22450 0.38 -0.5 373,234 - RR42_RS22450 0.38 -0.2 373,256 - RR42_RS22450 0.40 +0.3 373,416 + RR42_RS22450 0.54 -0.0 373,504 + RR42_RS22450 0.61 -1.9 373,504 + RR42_RS22450 0.61 -1.8 373,505 - RR42_RS22450 0.61 +0.0 373,505 - RR42_RS22450 0.61 -0.7 373,642 + RR42_RS22450 0.73 -0.2 373,642 + RR42_RS22450 0.73 -0.8 373,960 + +0.6 373,960 + -0.8 373,961 - -0.1 373,961 - +0.2 373,961 - +0.1 373,961 - +0.9 373,970 + +0.3 373,970 + +1.5 373,971 - -0.7 374,098 + RR42_RS22455 0.13 -0.3 374,098 + RR42_RS22455 0.13 +2.7 374,098 + RR42_RS22455 0.13 -1.2 374,098 + RR42_RS22455 0.13 -0.9 374,098 + RR42_RS22455 0.13 -0.4 374,099 - RR42_RS22455 0.13 -0.0 374,099 - RR42_RS22455 0.13 +0.6 374,099 - RR42_RS22455 0.13 -0.5 374,257 + RR42_RS22455 0.28 -0.6 374,438 + RR42_RS22455 0.45 +0.4 374,438 + RR42_RS22455 0.45 -0.7 374,438 + RR42_RS22455 0.45 +0.3 374,439 - RR42_RS22455 0.45 -1.5 374,439 - RR42_RS22455 0.45 -0.8 374,439 - RR42_RS22455 0.45 -0.0 374,605 + RR42_RS22455 0.60 -1.6 374,605 + RR42_RS22455 0.60 -1.8 374,606 - RR42_RS22455 0.60 -0.8 374,608 + RR42_RS22455 0.61 -0.8 374,608 + RR42_RS22455 0.61 -0.4 374,652 + RR42_RS22455 0.65 -0.6 374,652 + RR42_RS22455 0.65 -1.1 374,661 + RR42_RS22455 0.66 -0.9 374,672 + RR42_RS22455 0.67 +0.5 374,672 + RR42_RS22455 0.67 -0.8 374,672 + RR42_RS22455 0.67 -0.3 374,672 + RR42_RS22455 0.67 +0.8 374,672 + RR42_RS22455 0.67 +0.4 374,672 + RR42_RS22455 0.67 -0.2 374,673 - RR42_RS22455 0.67 -0.5 374,680 + RR42_RS22455 0.67 -0.2 374,680 + RR42_RS22455 0.67 -1.2 374,681 - RR42_RS22455 0.67 -0.7 374,681 - RR42_RS22455 0.67 -0.5 374,681 - RR42_RS22455 0.67 +1.2 374,683 + RR42_RS22455 0.68 -0.3 374,870 - RR42_RS22455 0.85 -0.1 374,914 + RR42_RS22455 0.89 +1.3 374,915 - RR42_RS22455 0.89 -0.6 374,915 - RR42_RS22455 0.89 +0.7 374,915 - RR42_RS22455 0.89 +1.3 374,915 - RR42_RS22455 0.89 -1.1 374,933 + +0.1 374,970 + +1.3 375,026 - -1.4 375,050 + +0.3 375,101 + -0.9 375,101 + +0.7 375,102 - +0.1 375,102 - -0.2 375,102 - -0.0 375,102 - -1.0 375,102 - -1.1 375,107 + +0.8 375,107 + -0.6 375,108 - +0.4 375,108 - +1.3 375,260 + RR42_RS22460 0.12 -0.4 375,471 + RR42_RS22460 0.42 -0.6 375,472 - RR42_RS22460 0.43 -0.8 375,664 + RR42_RS22460 0.70 -0.0 375,664 + RR42_RS22460 0.70 +0.1 375,664 + RR42_RS22460 0.70 +3.1 375,665 - RR42_RS22460 0.70 +1.4 375,665 - RR42_RS22460 0.70 +0.3 375,761 + RR42_RS22460 0.84 +0.3 375,761 + RR42_RS22460 0.84 +0.0 375,762 - RR42_RS22460 0.84 +1.1 375,847 - +0.4 375,847 - +0.1 375,860 + +1.5 375,861 - -0.3 375,875 + -0.0 375,887 + -0.8 375,887 + +0.2 375,887 + -0.0 375,887 + +0.3 375,888 - -0.6 375,888 - +0.1 375,925 + -0.6 375,925 + -0.3 375,933 + -0.4
Or see this region's nucleotide sequence