Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08370 and RR42_RS08375 are separated by 194 nucleotides RR42_RS08375 and RR42_RS08380 are separated by 29 nucleotides RR42_RS08380 and RR42_RS08385 are separated by 31 nucleotides
RR42_RS08370: RR42_RS08370 - hypothetical protein, at 1,770,204 to 1,771,322
_RS08370
RR42_RS08375: RR42_RS08375 - transposase, at 1,771,517 to 1,771,921
_RS08375
RR42_RS08380: RR42_RS08380 - hypothetical protein, at 1,771,951 to 1,772,760
_RS08380
RR42_RS08385: RR42_RS08385 - hypothetical protein, at 1,772,792 to 1,773,112
_RS08385
Position (kb)
1771
1772 Strain fitness (log2 ratio)
-1
0
1 at 1770.540 kb on + strand, within RR42_RS08370 at 1770.541 kb on - strand, within RR42_RS08370 at 1770.556 kb on + strand, within RR42_RS08370 at 1770.557 kb on - strand, within RR42_RS08370 at 1770.557 kb on - strand, within RR42_RS08370 at 1770.682 kb on + strand, within RR42_RS08370 at 1770.682 kb on + strand, within RR42_RS08370 at 1770.685 kb on + strand, within RR42_RS08370 at 1770.712 kb on + strand, within RR42_RS08370 at 1770.713 kb on - strand, within RR42_RS08370 at 1770.790 kb on + strand, within RR42_RS08370 at 1770.791 kb on - strand, within RR42_RS08370 at 1770.791 kb on - strand, within RR42_RS08370 at 1770.791 kb on - strand, within RR42_RS08370 at 1770.791 kb on - strand, within RR42_RS08370 at 1770.793 kb on + strand, within RR42_RS08370 at 1770.848 kb on + strand, within RR42_RS08370 at 1770.967 kb on - strand, within RR42_RS08370 at 1771.054 kb on + strand, within RR42_RS08370 at 1771.092 kb on - strand, within RR42_RS08370 at 1771.092 kb on - strand, within RR42_RS08370 at 1771.146 kb on + strand, within RR42_RS08370 at 1771.147 kb on - strand, within RR42_RS08370 at 1771.183 kb on - strand, within RR42_RS08370 at 1771.220 kb on + strand at 1771.371 kb on + strand at 1771.377 kb on + strand at 1771.387 kb on + strand at 1771.427 kb on - strand at 1771.479 kb on - strand at 1771.479 kb on - strand at 1772.791 kb on + strand at 1772.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,770,540 + RR42_RS08370 0.30 -0.7 1,770,541 - RR42_RS08370 0.30 +0.4 1,770,556 + RR42_RS08370 0.31 -0.0 1,770,557 - RR42_RS08370 0.32 +0.1 1,770,557 - RR42_RS08370 0.32 +0.5 1,770,682 + RR42_RS08370 0.43 +0.1 1,770,682 + RR42_RS08370 0.43 +1.3 1,770,685 + RR42_RS08370 0.43 +0.2 1,770,712 + RR42_RS08370 0.45 +0.4 1,770,713 - RR42_RS08370 0.45 -1.1 1,770,790 + RR42_RS08370 0.52 +0.7 1,770,791 - RR42_RS08370 0.52 +0.4 1,770,791 - RR42_RS08370 0.52 -1.1 1,770,791 - RR42_RS08370 0.52 -0.5 1,770,791 - RR42_RS08370 0.52 +0.3 1,770,793 + RR42_RS08370 0.53 +0.6 1,770,848 + RR42_RS08370 0.58 -0.0 1,770,967 - RR42_RS08370 0.68 -0.2 1,771,054 + RR42_RS08370 0.76 -0.5 1,771,092 - RR42_RS08370 0.79 -0.1 1,771,092 - RR42_RS08370 0.79 +0.3 1,771,146 + RR42_RS08370 0.84 +0.4 1,771,147 - RR42_RS08370 0.84 +0.9 1,771,183 - RR42_RS08370 0.87 +0.7 1,771,220 + +0.7 1,771,371 + -0.2 1,771,377 + +0.6 1,771,387 + +0.0 1,771,427 - -0.7 1,771,479 - +0.3 1,771,479 - +0.2 1,772,791 + -0.6 1,772,811 + -0.6
Or see this region's nucleotide sequence