Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08375

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08370 and RR42_RS08375 are separated by 194 nucleotidesRR42_RS08375 and RR42_RS08380 are separated by 29 nucleotidesRR42_RS08380 and RR42_RS08385 are separated by 31 nucleotides RR42_RS08370: RR42_RS08370 - hypothetical protein, at 1,770,204 to 1,771,322 _RS08370 RR42_RS08375: RR42_RS08375 - transposase, at 1,771,517 to 1,771,921 _RS08375 RR42_RS08380: RR42_RS08380 - hypothetical protein, at 1,771,951 to 1,772,760 _RS08380 RR42_RS08385: RR42_RS08385 - hypothetical protein, at 1,772,792 to 1,773,112 _RS08385 Position (kb) 1771 1772Strain fitness (log2 ratio) -1 0 1at 1770.540 kb on + strand, within RR42_RS08370at 1770.541 kb on - strand, within RR42_RS08370at 1770.556 kb on + strand, within RR42_RS08370at 1770.557 kb on - strand, within RR42_RS08370at 1770.557 kb on - strand, within RR42_RS08370at 1770.682 kb on + strand, within RR42_RS08370at 1770.682 kb on + strand, within RR42_RS08370at 1770.685 kb on + strand, within RR42_RS08370at 1770.712 kb on + strand, within RR42_RS08370at 1770.713 kb on - strand, within RR42_RS08370at 1770.790 kb on + strand, within RR42_RS08370at 1770.791 kb on - strand, within RR42_RS08370at 1770.791 kb on - strand, within RR42_RS08370at 1770.791 kb on - strand, within RR42_RS08370at 1770.791 kb on - strand, within RR42_RS08370at 1770.793 kb on + strand, within RR42_RS08370at 1770.848 kb on + strand, within RR42_RS08370at 1770.967 kb on - strand, within RR42_RS08370at 1771.054 kb on + strand, within RR42_RS08370at 1771.092 kb on - strand, within RR42_RS08370at 1771.092 kb on - strand, within RR42_RS08370at 1771.146 kb on + strand, within RR42_RS08370at 1771.147 kb on - strand, within RR42_RS08370at 1771.183 kb on - strand, within RR42_RS08370at 1771.220 kb on + strandat 1771.371 kb on + strandat 1771.377 kb on + strandat 1771.387 kb on + strandat 1771.427 kb on - strandat 1771.479 kb on - strandat 1771.479 kb on - strandat 1772.791 kb on + strandat 1772.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,770,540 + RR42_RS08370 0.30 -0.7
1,770,541 - RR42_RS08370 0.30 +0.4
1,770,556 + RR42_RS08370 0.31 -0.0
1,770,557 - RR42_RS08370 0.32 +0.1
1,770,557 - RR42_RS08370 0.32 +0.5
1,770,682 + RR42_RS08370 0.43 +0.1
1,770,682 + RR42_RS08370 0.43 +1.3
1,770,685 + RR42_RS08370 0.43 +0.2
1,770,712 + RR42_RS08370 0.45 +0.4
1,770,713 - RR42_RS08370 0.45 -1.1
1,770,790 + RR42_RS08370 0.52 +0.7
1,770,791 - RR42_RS08370 0.52 +0.4
1,770,791 - RR42_RS08370 0.52 -1.1
1,770,791 - RR42_RS08370 0.52 -0.5
1,770,791 - RR42_RS08370 0.52 +0.3
1,770,793 + RR42_RS08370 0.53 +0.6
1,770,848 + RR42_RS08370 0.58 -0.0
1,770,967 - RR42_RS08370 0.68 -0.2
1,771,054 + RR42_RS08370 0.76 -0.5
1,771,092 - RR42_RS08370 0.79 -0.1
1,771,092 - RR42_RS08370 0.79 +0.3
1,771,146 + RR42_RS08370 0.84 +0.4
1,771,147 - RR42_RS08370 0.84 +0.9
1,771,183 - RR42_RS08370 0.87 +0.7
1,771,220 + +0.7
1,771,371 + -0.2
1,771,377 + +0.6
1,771,387 + +0.0
1,771,427 - -0.7
1,771,479 - +0.3
1,771,479 - +0.2
1,772,791 + -0.6
1,772,811 + -0.6

Or see this region's nucleotide sequence