Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03220 and RR42_RS03225 are separated by 61 nucleotides RR42_RS03225 and RR42_RS03230 are separated by 59 nucleotides RR42_RS03230 and RR42_RS03235 are separated by 105 nucleotides
RR42_RS03220: RR42_RS03220 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 713,497 to 714,405
_RS03220
RR42_RS03225: RR42_RS03225 - N5-carboxyaminoimidazole ribonucleotide mutase, at 714,467 to 714,964
_RS03225
RR42_RS03230: RR42_RS03230 - phosphoribosylaminoimidazole carboxylase, at 715,024 to 716,268
_RS03230
RR42_RS03235: RR42_RS03235 - translation factor Sua5, at 716,374 to 717,360
_RS03235
Position (kb)
715
716
717 Strain fitness (log2 ratio)
-1
0
1
2 at 714.451 kb on + strand at 714.451 kb on + strand at 714.455 kb on + strand at 714.962 kb on + strand at 714.965 kb on + strand at 714.965 kb on + strand at 714.965 kb on + strand at 714.965 kb on + strand at 714.965 kb on + strand at 714.965 kb on + strand at 714.983 kb on + strand at 716.324 kb on + strand at 716.324 kb on + strand at 716.324 kb on + strand at 716.324 kb on + strand at 716.324 kb on + strand at 716.324 kb on + strand at 716.332 kb on + strand at 716.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 714,451 + +0.7 714,451 + -0.0 714,455 + +0.5 714,962 + -0.4 714,965 + -1.1 714,965 + +0.6 714,965 + +0.3 714,965 + -0.4 714,965 + +2.1 714,965 + +0.7 714,983 + +0.7 716,324 + +1.3 716,324 + -0.9 716,324 + +0.7 716,324 + +0.2 716,324 + +0.8 716,324 + +0.0 716,332 + +0.2 716,348 + -0.1
Or see this region's nucleotide sequence