Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02690

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS02680 and RR42_RS02685 are separated by 89 nucleotidesRR42_RS02685 and RR42_RS02690 are separated by 26 nucleotidesRR42_RS02690 and RR42_RS02695 are separated by 127 nucleotidesRR42_RS02695 and RR42_RS02700 are separated by 175 nucleotides RR42_RS02680: RR42_RS02680 - phospholipid-binding protein, at 598,748 to 599,407 _RS02680 RR42_RS02685: RR42_RS02685 - phosphoglycerate mutase, at 599,497 to 600,171 _RS02685 RR42_RS02690: RR42_RS02690 - membrane protein, at 600,198 to 600,923 _RS02690 RR42_RS02695: RR42_RS02695 - lipoprotein, at 601,051 to 601,635 _RS02695 RR42_RS02700: RR42_RS02700 - ATP-dependent DNA helicase RuvB, at 601,811 to 602,866 _RS02700 Position (kb) 600 601Strain fitness (log2 ratio) -2 -1 0 1 2 3at 599.243 kb on + strand, within RR42_RS02680at 599.243 kb on + strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.286 kb on + strand, within RR42_RS02680at 599.366 kb on + strandat 599.366 kb on + strandat 599.366 kb on + strandat 599.366 kb on + strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.405 kb on + strandat 599.405 kb on + strandat 599.406 kb on - strandat 599.466 kb on - strandat 599.684 kb on - strand, within RR42_RS02685at 599.782 kb on + strand, within RR42_RS02685at 599.807 kb on - strand, within RR42_RS02685at 599.870 kb on - strand, within RR42_RS02685at 600.002 kb on - strand, within RR42_RS02685at 600.199 kb on + strandat 600.200 kb on - strandat 600.200 kb on - strandat 600.241 kb on + strandat 600.241 kb on + strandat 600.241 kb on + strandat 600.242 kb on - strandat 600.245 kb on - strandat 600.286 kb on + strand, within RR42_RS02690at 600.286 kb on + strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.454 kb on - strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.589 kb on + strand, within RR42_RS02690at 600.698 kb on - strand, within RR42_RS02690at 600.703 kb on + strand, within RR42_RS02690at 600.703 kb on + strand, within RR42_RS02690at 600.871 kb on + strandat 600.871 kb on + strandat 600.871 kb on + strandat 600.871 kb on + strandat 600.874 kb on + strandat 600.875 kb on - strandat 600.879 kb on + strandat 600.880 kb on + strandat 600.881 kb on - strandat 600.881 kb on - strandat 600.881 kb on - strandat 600.955 kb on + strandat 600.956 kb on - strandat 600.956 kb on - strandat 600.956 kb on - strandat 600.992 kb on + strandat 601.052 kb on + strandat 601.053 kb on - strandat 601.156 kb on - strand, within RR42_RS02695at 601.156 kb on - strand, within RR42_RS02695at 601.239 kb on + strand, within RR42_RS02695at 601.245 kb on - strand, within RR42_RS02695at 601.245 kb on - strand, within RR42_RS02695at 601.328 kb on + strand, within RR42_RS02695at 601.331 kb on + strand, within RR42_RS02695at 601.332 kb on - strand, within RR42_RS02695at 601.544 kb on + strand, within RR42_RS02695at 601.545 kb on - strand, within RR42_RS02695at 601.786 kb on + strandat 601.786 kb on + strandat 601.786 kb on + strandat 601.787 kb on - strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.791 kb on - strandat 601.791 kb on - strandat 601.791 kb on - strandat 601.791 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
599,243 + RR42_RS02680 0.75 -0.2
599,243 + RR42_RS02680 0.75 +1.0
599,244 - RR42_RS02680 0.75 -1.0
599,244 - RR42_RS02680 0.75 +1.1
599,244 - RR42_RS02680 0.75 -1.1
599,286 + RR42_RS02680 0.82 -0.1
599,366 + +2.1
599,366 + -1.0
599,366 + -0.8
599,366 + +0.5
599,367 - +1.1
599,367 - +0.3
599,367 - +2.0
599,367 - -0.5
599,367 - -0.0
599,367 - -1.1
599,367 - -0.2
599,405 + +0.4
599,405 + -0.8
599,406 - -1.2
599,466 - -0.7
599,684 - RR42_RS02685 0.28 -0.7
599,782 + RR42_RS02685 0.42 -0.2
599,807 - RR42_RS02685 0.46 +0.2
599,870 - RR42_RS02685 0.55 -0.3
600,002 - RR42_RS02685 0.75 -0.1
600,199 + -0.0
600,200 - -1.4
600,200 - +0.2
600,241 + -0.4
600,241 + +0.3
600,241 + -2.1
600,242 - +0.5
600,245 - -0.1
600,286 + RR42_RS02690 0.12 +0.6
600,286 + RR42_RS02690 0.12 +0.2
600,287 - RR42_RS02690 0.12 -0.5
600,287 - RR42_RS02690 0.12 -0.0
600,287 - RR42_RS02690 0.12 -0.8
600,287 - RR42_RS02690 0.12 -0.0
600,331 + RR42_RS02690 0.18 +0.5
600,331 + RR42_RS02690 0.18 +0.7
600,331 + RR42_RS02690 0.18 -1.1
600,331 + RR42_RS02690 0.18 +0.3
600,332 - RR42_RS02690 0.18 -0.1
600,332 - RR42_RS02690 0.18 +0.5
600,332 - RR42_RS02690 0.18 -0.9
600,332 - RR42_RS02690 0.18 -0.7
600,394 + RR42_RS02690 0.27 -0.2
600,394 + RR42_RS02690 0.27 +0.5
600,394 + RR42_RS02690 0.27 +0.7
600,394 + RR42_RS02690 0.27 +0.7
600,394 + RR42_RS02690 0.27 -1.2
600,454 - RR42_RS02690 0.35 +0.2
600,496 + RR42_RS02690 0.41 +0.5
600,496 + RR42_RS02690 0.41 +0.4
600,496 + RR42_RS02690 0.41 +0.1
600,496 + RR42_RS02690 0.41 +0.2
600,496 + RR42_RS02690 0.41 -0.3
600,496 + RR42_RS02690 0.41 +0.7
600,496 + RR42_RS02690 0.41 -1.2
600,496 + RR42_RS02690 0.41 +1.3
600,496 + RR42_RS02690 0.41 +0.3
600,496 + RR42_RS02690 0.41 -0.2
600,496 + RR42_RS02690 0.41 +0.1
600,496 + RR42_RS02690 0.41 +0.2
600,496 + RR42_RS02690 0.41 +0.4
600,496 + RR42_RS02690 0.41 +0.5
600,496 + RR42_RS02690 0.41 +2.1
600,496 + RR42_RS02690 0.41 -0.5
600,496 + RR42_RS02690 0.41 -0.1
600,497 - RR42_RS02690 0.41 -0.1
600,497 - RR42_RS02690 0.41 +1.1
600,497 - RR42_RS02690 0.41 -0.1
600,497 - RR42_RS02690 0.41 -0.6
600,497 - RR42_RS02690 0.41 -0.7
600,497 - RR42_RS02690 0.41 +0.6
600,497 - RR42_RS02690 0.41 -0.3
600,497 - RR42_RS02690 0.41 -0.2
600,497 - RR42_RS02690 0.41 +0.1
600,557 + RR42_RS02690 0.49 +1.1
600,557 + RR42_RS02690 0.49 +0.6
600,557 + RR42_RS02690 0.49 -0.2
600,557 + RR42_RS02690 0.49 +0.4
600,589 + RR42_RS02690 0.54 +0.1
600,698 - RR42_RS02690 0.69 +0.2
600,703 + RR42_RS02690 0.70 +0.7
600,703 + RR42_RS02690 0.70 +0.2
600,871 + +0.5
600,871 + -0.7
600,871 + -1.6
600,871 + +3.4
600,874 + +0.4
600,875 - +0.2
600,879 + +1.3
600,880 + -0.6
600,881 - +0.1
600,881 - +0.4
600,881 - -1.7
600,955 + -0.8
600,956 - -1.3
600,956 - +0.3
600,956 - +0.6
600,992 + +1.4
601,052 + -0.9
601,053 - +0.2
601,156 - RR42_RS02695 0.18 +0.3
601,156 - RR42_RS02695 0.18 +0.1
601,239 + RR42_RS02695 0.32 +0.6
601,245 - RR42_RS02695 0.33 -0.9
601,245 - RR42_RS02695 0.33 +0.1
601,328 + RR42_RS02695 0.47 +0.1
601,331 + RR42_RS02695 0.48 +0.6
601,332 - RR42_RS02695 0.48 +0.5
601,544 + RR42_RS02695 0.84 -0.3
601,545 - RR42_RS02695 0.84 -0.2
601,786 + +1.1
601,786 + +0.1
601,786 + +0.1
601,787 - -0.1
601,790 + -0.7
601,790 + +0.8
601,790 + -0.4
601,790 + -0.9
601,790 + +0.6
601,790 + +0.9
601,791 - -0.2
601,791 - +0.6
601,791 - +0.4
601,791 - -1.1

Or see this region's nucleotide sequence