Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02435 and RR42_RS02440 are separated by 14 nucleotides RR42_RS02440 and RR42_RS02445 are separated by 43 nucleotides RR42_RS02445 and RR42_RS02450 are separated by 65 nucleotides
RR42_RS02435: RR42_RS02435 - FmdB family transcriptional regulator, at 548,435 to 548,794
_RS02435
RR42_RS02440: RR42_RS02440 - membrane protein, at 548,809 to 549,507
_RS02440
RR42_RS02445: RR42_RS02445 - aspartyl-tRNA synthetase, at 549,551 to 551,356
_RS02445
RR42_RS02450: RR42_RS02450 - MFS transporter, at 551,422 to 552,729
_RS02450
Position (kb) 549
550
551
552 Strain fitness (log2 ratio) -1
0
1
2 at 549.093 kb on + strand, within RR42_RS02440 at 549.385 kb on + strand, within RR42_RS02440 at 551.503 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.523 kb on - strand at 551.642 kb on + strand, within RR42_RS02450 at 551.642 kb on + strand, within RR42_RS02450 at 551.694 kb on - strand, within RR42_RS02450 at 551.711 kb on - strand, within RR42_RS02450 at 551.737 kb on + strand, within RR42_RS02450 at 551.737 kb on + strand, within RR42_RS02450 at 551.933 kb on + strand, within RR42_RS02450 at 551.945 kb on + strand, within RR42_RS02450 at 551.945 kb on + strand, within RR42_RS02450 at 551.946 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.990 kb on + strand, within RR42_RS02450 at 551.990 kb on + strand, within RR42_RS02450 at 551.991 kb on - strand, within RR42_RS02450 at 552.034 kb on + strand, within RR42_RS02450 at 552.034 kb on + strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.282 kb on + strand, within RR42_RS02450 at 552.283 kb on - strand, within RR42_RS02450
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 549,093 + RR42_RS02440 0.41 -1.2 549,385 + RR42_RS02440 0.82 -0.2 551,503 + -0.0 551,522 + -0.8 551,522 + +1.3 551,522 + -0.7 551,522 + +0.0 551,522 + +0.3 551,523 - +0.7 551,642 + RR42_RS02450 0.17 +0.9 551,642 + RR42_RS02450 0.17 -1.4 551,694 - RR42_RS02450 0.21 -0.2 551,711 - RR42_RS02450 0.22 +0.1 551,737 + RR42_RS02450 0.24 -1.3 551,737 + RR42_RS02450 0.24 +0.0 551,933 + RR42_RS02450 0.39 +0.8 551,945 + RR42_RS02450 0.40 -0.5 551,945 + RR42_RS02450 0.40 -0.1 551,946 - RR42_RS02450 0.40 +0.4 551,973 - RR42_RS02450 0.42 +2.1 551,973 - RR42_RS02450 0.42 -1.2 551,973 - RR42_RS02450 0.42 +0.0 551,990 + RR42_RS02450 0.43 -1.4 551,990 + RR42_RS02450 0.43 +0.4 551,991 - RR42_RS02450 0.44 +0.3 552,034 + RR42_RS02450 0.47 +0.2 552,034 + RR42_RS02450 0.47 +0.4 552,035 - RR42_RS02450 0.47 +0.5 552,035 - RR42_RS02450 0.47 -0.2 552,035 - RR42_RS02450 0.47 +0.1 552,282 + RR42_RS02450 0.66 +1.3 552,283 - RR42_RS02450 0.66 +0.5
Or see this region's nucleotide sequence