Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01640 and RR42_RS01645 are separated by 87 nucleotides RR42_RS01645 and RR42_RS01650 are separated by 102 nucleotides
RR42_RS01640: RR42_RS01640 - ABC transporter permease, at 373,831 to 374,907
_RS01640
RR42_RS01645: RR42_RS01645 - ABC transporter permease, at 374,995 to 376,329
_RS01645
RR42_RS01650: RR42_RS01650 - branched-chain amino acid ABC transporter ATP-binding protein, at 376,432 to 377,247
_RS01650
Position (kb) 374
375
376
377 Strain fitness (log2 ratio) -2
-1
0
1 at 374.031 kb on + strand, within RR42_RS01640 at 374.032 kb on - strand, within RR42_RS01640 at 374.105 kb on - strand, within RR42_RS01640 at 374.152 kb on - strand, within RR42_RS01640 at 374.224 kb on + strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.570 kb on - strand, within RR42_RS01640 at 374.582 kb on - strand, within RR42_RS01640 at 375.027 kb on - strand at 375.115 kb on + strand at 375.131 kb on - strand, within RR42_RS01645 at 375.172 kb on + strand, within RR42_RS01645 at 375.247 kb on + strand, within RR42_RS01645 at 375.248 kb on - strand, within RR42_RS01645 at 375.274 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.547 kb on + strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.697 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.933 kb on + strand, within RR42_RS01645 at 375.934 kb on - strand, within RR42_RS01645 at 375.967 kb on + strand, within RR42_RS01645 at 375.968 kb on - strand, within RR42_RS01645 at 375.968 kb on - strand, within RR42_RS01645 at 376.030 kb on + strand, within RR42_RS01645 at 376.031 kb on - strand, within RR42_RS01645 at 376.456 kb on - strand at 376.468 kb on + strand at 376.468 kb on + strand at 376.469 kb on - strand at 376.469 kb on - strand at 376.760 kb on - strand, within RR42_RS01650 at 376.760 kb on - strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.811 kb on - strand, within RR42_RS01650 at 377.060 kb on - strand, within RR42_RS01650 at 377.074 kb on + strand, within RR42_RS01650 at 377.075 kb on - strand, within RR42_RS01650 at 377.152 kb on + strand, within RR42_RS01650 at 377.152 kb on + strand, within RR42_RS01650 at 377.153 kb on - strand, within RR42_RS01650 at 377.218 kb on + strand at 377.218 kb on + strand at 377.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 374,031 + RR42_RS01640 0.19 +0.8 374,032 - RR42_RS01640 0.19 -1.7 374,105 - RR42_RS01640 0.25 -0.1 374,152 - RR42_RS01640 0.30 -0.2 374,224 + RR42_RS01640 0.36 +1.2 374,375 - RR42_RS01640 0.51 +0.4 374,375 - RR42_RS01640 0.51 +0.4 374,570 - RR42_RS01640 0.69 +0.8 374,582 - RR42_RS01640 0.70 -0.3 375,027 - +0.6 375,115 + -1.6 375,131 - RR42_RS01645 0.10 +0.4 375,172 + RR42_RS01645 0.13 -0.2 375,247 + RR42_RS01645 0.19 -1.7 375,248 - RR42_RS01645 0.19 -0.4 375,274 + RR42_RS01645 0.21 +0.2 375,541 + RR42_RS01645 0.41 +0.1 375,541 + RR42_RS01645 0.41 -0.1 375,541 + RR42_RS01645 0.41 -0.9 375,547 + RR42_RS01645 0.41 -0.4 375,563 - RR42_RS01645 0.43 +1.1 375,563 - RR42_RS01645 0.43 +0.1 375,697 + RR42_RS01645 0.53 +0.3 375,844 + RR42_RS01645 0.64 -0.3 375,844 + RR42_RS01645 0.64 -0.7 375,844 + RR42_RS01645 0.64 +0.4 375,844 + RR42_RS01645 0.64 +0.7 375,844 + RR42_RS01645 0.64 -0.1 375,845 - RR42_RS01645 0.64 +0.5 375,845 - RR42_RS01645 0.64 +1.4 375,846 + RR42_RS01645 0.64 -1.3 375,846 + RR42_RS01645 0.64 -0.1 375,933 + RR42_RS01645 0.70 -0.1 375,934 - RR42_RS01645 0.70 +0.4 375,967 + RR42_RS01645 0.73 +0.5 375,968 - RR42_RS01645 0.73 -0.1 375,968 - RR42_RS01645 0.73 -0.4 376,030 + RR42_RS01645 0.78 +0.1 376,031 - RR42_RS01645 0.78 -0.1 376,456 - -1.1 376,468 + +0.9 376,468 + +0.4 376,469 - +0.4 376,469 - +0.2 376,760 - RR42_RS01650 0.40 -1.6 376,760 - RR42_RS01650 0.40 -0.3 376,761 + RR42_RS01650 0.40 +0.4 376,761 + RR42_RS01650 0.40 -1.5 376,761 + RR42_RS01650 0.40 -0.5 376,811 - RR42_RS01650 0.46 -1.2 377,060 - RR42_RS01650 0.77 +0.8 377,074 + RR42_RS01650 0.79 -0.4 377,075 - RR42_RS01650 0.79 +0.3 377,152 + RR42_RS01650 0.88 -1.9 377,152 + RR42_RS01650 0.88 -0.4 377,153 - RR42_RS01650 0.88 -0.7 377,218 + +0.4 377,218 + +0.2 377,218 + +0.2
Or see this region's nucleotide sequence