Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01455

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01450 and RR42_RS01455 are separated by 257 nucleotidesRR42_RS01455 and RR42_RS01460 are separated by 120 nucleotides RR42_RS01450: RR42_RS01450 - hypothetical protein, at 326,030 to 326,896 _RS01450 RR42_RS01455: RR42_RS01455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 327,154 to 328,515 _RS01455 RR42_RS01460: RR42_RS01460 - glucosamine--fructose-6-phosphate aminotransferase, at 328,636 to 330,474 _RS01460 Position (kb) 327 328 329Strain fitness (log2 ratio) -2 -1 0 1 2at 326.257 kb on - strand, within RR42_RS01450at 326.451 kb on + strand, within RR42_RS01450at 326.520 kb on + strand, within RR42_RS01450at 326.690 kb on + strand, within RR42_RS01450at 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.815 kb on - strandat 326.815 kb on - strandat 326.815 kb on - strandat 326.861 kb on + strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.867 kb on + strandat 326.868 kb on + strandat 326.868 kb on - strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.978 kb on - strandat 326.978 kb on - strandat 326.978 kb on - strandat 326.978 kb on - strandat 326.978 kb on - strandat 326.978 kb on - strandat 327.117 kb on + strandat 327.141 kb on + strandat 327.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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326,257 - RR42_RS01450 0.26 -0.2
326,451 + RR42_RS01450 0.49 -0.3
326,520 + RR42_RS01450 0.57 -0.5
326,690 + RR42_RS01450 0.76 -2.2
326,814 + -0.2
326,814 + -0.6
326,814 + +0.1
326,814 + -0.4
326,814 + -0.6
326,814 + +0.2
326,814 + -1.7
326,814 + +0.2
326,815 - +0.0
326,815 - +0.1
326,815 - -1.2
326,861 + -0.4
326,862 - -0.4
326,862 - +1.8
326,862 - +0.5
326,862 - +0.2
326,862 - -0.9
326,862 - +0.2
326,867 + -0.9
326,868 + -1.2
326,868 - +0.6
326,977 + -0.1
326,977 + +1.5
326,977 + +0.9
326,977 + -0.0
326,977 + +0.8
326,977 + +0.4
326,978 - -0.2
326,978 - +0.9
326,978 - -0.6
326,978 - +0.0
326,978 - +0.3
326,978 - +0.2
327,117 + +0.3
327,141 + -0.1
327,141 + +0.8

Or see this region's nucleotide sequence