Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00345 and RR42_RS00350 are separated by 18 nucleotides RR42_RS00350 and RR42_RS00355 are separated by 141 nucleotides
RR42_RS00345: RR42_RS00345 - LysR family transcriptional regulator, at 94,805 to 95,716
_RS00345
RR42_RS00350: RR42_RS00350 - LysR family transcriptional regulator, at 95,735 to 96,637
_RS00350
RR42_RS00355: RR42_RS00355 - hypothetical protein, at 96,779 to 97,741
_RS00355
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.735 kb on - strand at 94.812 kb on + strand at 94.813 kb on - strand at 94.818 kb on - strand at 94.985 kb on + strand, within RR42_RS00345 at 94.986 kb on - strand, within RR42_RS00345 at 95.714 kb on + strand at 95.714 kb on + strand at 95.790 kb on + strand at 95.908 kb on + strand, within RR42_RS00350 at 95.908 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.911 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.666 kb on + strand at 96.667 kb on - strand at 96.814 kb on - strand at 97.019 kb on + strand, within RR42_RS00355 at 97.020 kb on - strand, within RR42_RS00355 at 97.101 kb on - strand, within RR42_RS00355 at 97.115 kb on + strand, within RR42_RS00355 at 97.191 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.377 kb on - strand, within RR42_RS00355 at 97.465 kb on + strand, within RR42_RS00355 at 97.611 kb on - strand, within RR42_RS00355
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 94,735 - -0.6 94,812 + +0.3 94,813 - +0.6 94,818 - -0.3 94,985 + RR42_RS00345 0.20 +1.2 94,986 - RR42_RS00345 0.20 +1.6 95,714 + -0.5 95,714 + -0.3 95,790 + -0.5 95,908 + RR42_RS00350 0.19 +0.3 95,908 + RR42_RS00350 0.19 -0.3 95,910 + RR42_RS00350 0.19 +0.2 95,910 + RR42_RS00350 0.19 +0.2 95,910 + RR42_RS00350 0.19 -0.3 95,910 + RR42_RS00350 0.19 -0.9 95,910 + RR42_RS00350 0.19 -0.6 95,911 - RR42_RS00350 0.19 +0.1 96,118 - RR42_RS00350 0.42 -1.1 96,118 - RR42_RS00350 0.42 +0.2 96,136 + RR42_RS00350 0.44 +0.1 96,136 + RR42_RS00350 0.44 +0.9 96,136 + RR42_RS00350 0.44 -1.3 96,137 - RR42_RS00350 0.45 -0.1 96,137 - RR42_RS00350 0.45 -1.3 96,140 + RR42_RS00350 0.45 +2.6 96,140 + RR42_RS00350 0.45 -0.5 96,666 + -0.9 96,667 - -0.1 96,814 - +0.2 97,019 + RR42_RS00355 0.25 +0.6 97,020 - RR42_RS00355 0.25 -0.9 97,101 - RR42_RS00355 0.33 +0.0 97,115 + RR42_RS00355 0.35 -1.3 97,191 + RR42_RS00355 0.43 -1.2 97,340 + RR42_RS00355 0.58 -0.7 97,340 + RR42_RS00355 0.58 -2.1 97,340 + RR42_RS00355 0.58 +0.3 97,341 - RR42_RS00355 0.58 +1.0 97,341 - RR42_RS00355 0.58 +0.5 97,341 - RR42_RS00355 0.58 -1.0 97,377 - RR42_RS00355 0.62 +0.2 97,465 + RR42_RS00355 0.71 +0.9 97,611 - RR42_RS00355 0.86 +0.9
Or see this region's nucleotide sequence