Experiment: Defined media control, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_09010 and IAI47_09015 are separated by 55 nucleotides IAI47_09015 and IAI47_09020 are separated by 96 nucleotides IAI47_09020 and IAI47_09025 are separated by 99 nucleotides
IAI47_09010: IAI47_09010 - formyltetrahydrofolate deformylase, at 1,901,922 to 1,902,770
_09010
IAI47_09015: IAI47_09015 - YchJ family protein, at 1,902,826 to 1,903,281
_09015
IAI47_09020: IAI47_09020 - patatin-like phospholipase RssA, at 1,903,378 to 1,904,283
_09020
IAI47_09025: IAI47_09025 - two-component system response regulator RssB, at 1,904,383 to 1,905,399
_09025
Position (kb) 1903
1904
1905 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1902.399 kb on - strand, within IAI47_09010 at 1902.431 kb on + strand, within IAI47_09010 at 1902.459 kb on + strand, within IAI47_09010 at 1902.504 kb on + strand, within IAI47_09010 at 1902.666 kb on - strand, within IAI47_09010 at 1902.689 kb on + strand at 1902.690 kb on - strand at 1902.690 kb on - strand at 1902.690 kb on - strand at 1902.690 kb on - strand at 1902.738 kb on + strand at 1902.796 kb on + strand at 1902.797 kb on - strand at 1902.797 kb on - strand at 1902.827 kb on + strand at 1902.900 kb on + strand, within IAI47_09015 at 1902.901 kb on - strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.914 kb on + strand, within IAI47_09015 at 1902.915 kb on - strand, within IAI47_09015 at 1903.032 kb on + strand, within IAI47_09015 at 1903.032 kb on + strand, within IAI47_09015 at 1903.033 kb on - strand, within IAI47_09015 at 1903.033 kb on - strand, within IAI47_09015 at 1903.033 kb on - strand, within IAI47_09015 at 1903.033 kb on - strand, within IAI47_09015 at 1903.042 kb on + strand, within IAI47_09015 at 1903.043 kb on - strand, within IAI47_09015 at 1903.113 kb on + strand, within IAI47_09015 at 1903.114 kb on - strand, within IAI47_09015 at 1903.114 kb on - strand, within IAI47_09015 at 1903.139 kb on + strand, within IAI47_09015 at 1903.139 kb on + strand, within IAI47_09015 at 1903.149 kb on + strand, within IAI47_09015 at 1903.160 kb on + strand, within IAI47_09015 at 1903.160 kb on + strand, within IAI47_09015 at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.242 kb on + strand at 1903.242 kb on + strand at 1903.242 kb on + strand at 1903.242 kb on + strand at 1903.243 kb on - strand at 1903.243 kb on - strand at 1903.244 kb on + strand at 1903.244 kb on + strand at 1903.244 kb on + strand at 1903.244 kb on + strand at 1903.245 kb on - strand at 1903.245 kb on - strand at 1903.257 kb on + strand at 1903.258 kb on - strand at 1903.284 kb on + strand at 1903.284 kb on + strand at 1903.285 kb on - strand at 1903.285 kb on - strand at 1903.285 kb on - strand at 1903.285 kb on - strand at 1903.299 kb on - strand at 1903.322 kb on + strand at 1903.322 kb on + strand at 1903.323 kb on - strand at 1903.323 kb on - strand at 1903.323 kb on - strand at 1903.327 kb on + strand at 1903.327 kb on + strand at 1903.328 kb on - strand at 1903.350 kb on + strand at 1903.350 kb on + strand at 1903.351 kb on - strand at 1903.351 kb on - strand at 1903.351 kb on - strand at 1903.354 kb on + strand at 1903.354 kb on + strand at 1903.355 kb on - strand at 1903.355 kb on - strand at 1903.373 kb on + strand at 1903.525 kb on + strand, within IAI47_09020 at 1903.525 kb on + strand, within IAI47_09020 at 1903.526 kb on - strand, within IAI47_09020 at 1903.533 kb on + strand, within IAI47_09020 at 1903.587 kb on + strand, within IAI47_09020 at 1903.588 kb on - strand, within IAI47_09020 at 1903.628 kb on + strand, within IAI47_09020 at 1903.629 kb on - strand, within IAI47_09020 at 1903.629 kb on - strand, within IAI47_09020 at 1903.695 kb on + strand, within IAI47_09020 at 1903.695 kb on + strand, within IAI47_09020 at 1903.695 kb on + strand, within IAI47_09020 at 1903.763 kb on + strand, within IAI47_09020 at 1903.763 kb on + strand, within IAI47_09020 at 1903.763 kb on + strand, within IAI47_09020 at 1903.764 kb on - strand, within IAI47_09020 at 1903.788 kb on + strand, within IAI47_09020 at 1903.788 kb on + strand, within IAI47_09020 at 1903.788 kb on + strand, within IAI47_09020 at 1903.789 kb on - strand, within IAI47_09020 at 1903.791 kb on + strand, within IAI47_09020 at 1903.791 kb on + strand, within IAI47_09020 at 1903.791 kb on + strand, within IAI47_09020 at 1903.791 kb on + strand, within IAI47_09020 at 1903.791 kb on + strand, within IAI47_09020 at 1903.791 kb on + strand, within IAI47_09020 at 1903.791 kb on + strand, within IAI47_09020 at 1903.791 kb on + strand, within IAI47_09020 at 1903.792 kb on - strand, within IAI47_09020 at 1903.792 kb on - strand, within IAI47_09020 at 1903.802 kb on + strand, within IAI47_09020 at 1903.802 kb on + strand, within IAI47_09020 at 1903.802 kb on + strand, within IAI47_09020 at 1903.802 kb on + strand, within IAI47_09020 at 1903.802 kb on + strand, within IAI47_09020 at 1903.805 kb on + strand, within IAI47_09020 at 1903.805 kb on + strand, within IAI47_09020 at 1903.805 kb on + strand, within IAI47_09020 at 1903.806 kb on - strand, within IAI47_09020 at 1903.819 kb on + strand, within IAI47_09020 at 1903.819 kb on + strand, within IAI47_09020 at 1903.820 kb on - strand, within IAI47_09020 at 1903.838 kb on + strand, within IAI47_09020 at 1903.838 kb on + strand, within IAI47_09020 at 1903.838 kb on + strand, within IAI47_09020 at 1903.838 kb on + strand, within IAI47_09020 at 1903.838 kb on + strand, within IAI47_09020 at 1903.902 kb on + strand, within IAI47_09020 at 1903.916 kb on + strand, within IAI47_09020 at 1903.916 kb on + strand, within IAI47_09020 at 1903.917 kb on - strand, within IAI47_09020 at 1903.934 kb on + strand, within IAI47_09020 at 1903.934 kb on + strand, within IAI47_09020 at 1903.934 kb on + strand, within IAI47_09020 at 1903.934 kb on + strand, within IAI47_09020 at 1903.934 kb on + strand, within IAI47_09020 at 1904.082 kb on + strand, within IAI47_09020 at 1904.082 kb on + strand, within IAI47_09020 at 1904.082 kb on + strand, within IAI47_09020 at 1904.082 kb on + strand, within IAI47_09020 at 1904.082 kb on + strand, within IAI47_09020 at 1904.082 kb on + strand, within IAI47_09020 at 1904.083 kb on - strand, within IAI47_09020 at 1904.130 kb on + strand, within IAI47_09020 at 1904.130 kb on + strand, within IAI47_09020 at 1904.157 kb on - strand, within IAI47_09020 at 1904.157 kb on - strand, within IAI47_09020 at 1904.159 kb on + strand, within IAI47_09020 at 1904.159 kb on + strand, within IAI47_09020 at 1904.237 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.258 kb on + strand at 1904.259 kb on - strand at 1904.261 kb on + strand at 1904.261 kb on + strand at 1904.281 kb on + strand at 1904.281 kb on + strand at 1904.352 kb on + strand at 1904.352 kb on + strand at 1904.360 kb on + strand at 1904.360 kb on + strand at 1904.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined media control, aerobic remove 1,902,399 - IAI47_09010 0.56 -2.6 1,902,431 + IAI47_09010 0.60 -1.7 1,902,459 + IAI47_09010 0.63 -3.1 1,902,504 + IAI47_09010 0.69 -2.1 1,902,666 - IAI47_09010 0.88 -2.1 1,902,689 + +1.4 1,902,690 - -2.5 1,902,690 - -1.9 1,902,690 - -2.8 1,902,690 - -0.4 1,902,738 + -4.1 1,902,796 + -2.5 1,902,797 - -0.9 1,902,797 - -1.4 1,902,827 + -2.3 1,902,900 + IAI47_09015 0.16 -1.9 1,902,901 - IAI47_09015 0.16 -2.1 1,902,911 + IAI47_09015 0.19 -1.9 1,902,911 + IAI47_09015 0.19 -3.2 1,902,911 + IAI47_09015 0.19 -1.2 1,902,911 + IAI47_09015 0.19 -2.9 1,902,911 + IAI47_09015 0.19 -2.6 1,902,911 + IAI47_09015 0.19 -2.7 1,902,911 + IAI47_09015 0.19 -1.5 1,902,911 + IAI47_09015 0.19 -1.9 1,902,911 + IAI47_09015 0.19 -3.2 1,902,912 - IAI47_09015 0.19 -1.1 1,902,912 - IAI47_09015 0.19 +0.4 1,902,912 - IAI47_09015 0.19 +0.8 1,902,912 - IAI47_09015 0.19 +0.1 1,902,912 - IAI47_09015 0.19 +1.4 1,902,912 - IAI47_09015 0.19 -0.4 1,902,912 - IAI47_09015 0.19 +0.3 1,902,912 - IAI47_09015 0.19 +0.9 1,902,912 - IAI47_09015 0.19 +1.9 1,902,912 - IAI47_09015 0.19 -1.1 1,902,912 - IAI47_09015 0.19 +1.4 1,902,914 + IAI47_09015 0.19 -1.2 1,902,915 - IAI47_09015 0.20 -2.0 1,903,032 + IAI47_09015 0.45 -0.2 1,903,032 + IAI47_09015 0.45 -0.3 1,903,033 - IAI47_09015 0.45 -1.5 1,903,033 - IAI47_09015 0.45 -2.6 1,903,033 - IAI47_09015 0.45 +0.8 1,903,033 - IAI47_09015 0.45 +0.1 1,903,042 + IAI47_09015 0.47 -0.6 1,903,043 - IAI47_09015 0.48 +0.0 1,903,113 + IAI47_09015 0.63 +0.7 1,903,114 - IAI47_09015 0.63 +1.1 1,903,114 - IAI47_09015 0.63 -1.8 1,903,139 + IAI47_09015 0.69 +1.1 1,903,139 + IAI47_09015 0.69 -2.1 1,903,149 + IAI47_09015 0.71 +0.1 1,903,160 + IAI47_09015 0.73 -0.6 1,903,160 + IAI47_09015 0.73 -1.5 1,903,237 + +1.4 1,903,237 + -0.0 1,903,237 + +1.1 1,903,237 + +1.5 1,903,237 + -1.4 1,903,237 + -0.0 1,903,237 + -0.6 1,903,237 + +2.0 1,903,237 + +0.8 1,903,237 + +0.8 1,903,237 + +0.9 1,903,237 + +0.3 1,903,237 + -0.1 1,903,237 + +0.2 1,903,237 + -2.1 1,903,238 - -2.4 1,903,238 - -0.1 1,903,238 - -2.0 1,903,238 - +1.1 1,903,238 - -1.7 1,903,238 - +1.2 1,903,238 - +1.2 1,903,238 - +1.0 1,903,238 - +0.1 1,903,238 - +0.8 1,903,238 - -2.3 1,903,238 - -1.7 1,903,238 - -1.5 1,903,242 + +0.3 1,903,242 + -0.9 1,903,242 + -1.8 1,903,242 + +1.3 1,903,243 - +0.2 1,903,243 - -1.5 1,903,244 + -0.3 1,903,244 + +0.2 1,903,244 + +0.9 1,903,244 + -0.4 1,903,245 - -2.4 1,903,245 - +3.0 1,903,257 + +0.3 1,903,258 - +2.6 1,903,284 + -2.4 1,903,284 + -2.9 1,903,285 - -1.2 1,903,285 - -0.5 1,903,285 - +1.2 1,903,285 - -0.9 1,903,299 - +0.8 1,903,322 + +0.7 1,903,322 + +1.7 1,903,323 - -1.3 1,903,323 - -0.2 1,903,323 - -0.1 1,903,327 + -0.4 1,903,327 + +0.2 1,903,328 - +1.8 1,903,350 + -0.4 1,903,350 + +0.3 1,903,351 - -1.4 1,903,351 - -1.9 1,903,351 - -1.3 1,903,354 + +2.4 1,903,354 + +0.6 1,903,355 - +1.5 1,903,355 - -2.2 1,903,373 + +0.3 1,903,525 + IAI47_09020 0.16 +1.1 1,903,525 + IAI47_09020 0.16 -0.5 1,903,526 - IAI47_09020 0.16 -0.9 1,903,533 + IAI47_09020 0.17 +0.4 1,903,587 + IAI47_09020 0.23 +1.2 1,903,588 - IAI47_09020 0.23 +0.3 1,903,628 + IAI47_09020 0.28 -0.8 1,903,629 - IAI47_09020 0.28 -0.2 1,903,629 - IAI47_09020 0.28 -0.4 1,903,695 + IAI47_09020 0.35 -0.0 1,903,695 + IAI47_09020 0.35 +0.3 1,903,695 + IAI47_09020 0.35 +1.6 1,903,763 + IAI47_09020 0.42 -1.5 1,903,763 + IAI47_09020 0.42 +0.9 1,903,763 + IAI47_09020 0.42 +1.4 1,903,764 - IAI47_09020 0.43 +0.4 1,903,788 + IAI47_09020 0.45 -0.3 1,903,788 + IAI47_09020 0.45 -1.3 1,903,788 + IAI47_09020 0.45 +2.6 1,903,789 - IAI47_09020 0.45 +0.8 1,903,791 + IAI47_09020 0.46 -0.5 1,903,791 + IAI47_09020 0.46 +1.0 1,903,791 + IAI47_09020 0.46 -2.3 1,903,791 + IAI47_09020 0.46 -1.0 1,903,791 + IAI47_09020 0.46 +0.3 1,903,791 + IAI47_09020 0.46 -1.2 1,903,791 + IAI47_09020 0.46 -0.4 1,903,791 + IAI47_09020 0.46 +0.0 1,903,792 - IAI47_09020 0.46 +1.8 1,903,792 - IAI47_09020 0.46 -2.3 1,903,802 + IAI47_09020 0.47 +1.2 1,903,802 + IAI47_09020 0.47 +0.4 1,903,802 + IAI47_09020 0.47 -1.8 1,903,802 + IAI47_09020 0.47 +0.8 1,903,802 + IAI47_09020 0.47 -0.9 1,903,805 + IAI47_09020 0.47 +0.8 1,903,805 + IAI47_09020 0.47 +0.4 1,903,805 + IAI47_09020 0.47 -0.3 1,903,806 - IAI47_09020 0.47 +0.8 1,903,819 + IAI47_09020 0.49 -0.8 1,903,819 + IAI47_09020 0.49 +1.7 1,903,820 - IAI47_09020 0.49 +1.4 1,903,838 + IAI47_09020 0.51 -3.4 1,903,838 + IAI47_09020 0.51 +0.6 1,903,838 + IAI47_09020 0.51 +1.9 1,903,838 + IAI47_09020 0.51 -1.1 1,903,838 + IAI47_09020 0.51 +1.3 1,903,902 + IAI47_09020 0.58 -1.7 1,903,916 + IAI47_09020 0.59 -1.8 1,903,916 + IAI47_09020 0.59 -2.0 1,903,917 - IAI47_09020 0.59 -1.4 1,903,934 + IAI47_09020 0.61 +0.3 1,903,934 + IAI47_09020 0.61 +0.7 1,903,934 + IAI47_09020 0.61 -0.5 1,903,934 + IAI47_09020 0.61 -0.9 1,903,934 + IAI47_09020 0.61 -0.3 1,904,082 + IAI47_09020 0.78 -1.9 1,904,082 + IAI47_09020 0.78 +0.1 1,904,082 + IAI47_09020 0.78 -0.8 1,904,082 + IAI47_09020 0.78 +0.8 1,904,082 + IAI47_09020 0.78 +1.6 1,904,082 + IAI47_09020 0.78 -0.4 1,904,083 - IAI47_09020 0.78 -0.8 1,904,130 + IAI47_09020 0.83 +0.6 1,904,130 + IAI47_09020 0.83 +1.2 1,904,157 - IAI47_09020 0.86 -0.9 1,904,157 - IAI47_09020 0.86 -2.4 1,904,159 + IAI47_09020 0.86 -1.1 1,904,159 + IAI47_09020 0.86 +2.0 1,904,237 + +0.9 1,904,258 + -2.2 1,904,258 + +1.5 1,904,258 + +2.7 1,904,258 + +1.4 1,904,258 + -0.4 1,904,258 + +1.2 1,904,258 + -0.1 1,904,258 + -2.0 1,904,258 + +0.1 1,904,258 + +0.6 1,904,258 + +0.3 1,904,258 + +0.5 1,904,259 - -1.1 1,904,261 + +1.1 1,904,261 + +0.0 1,904,281 + -2.2 1,904,281 + -1.2 1,904,352 + +0.4 1,904,352 + +0.8 1,904,360 + +0.6 1,904,360 + +1.6 1,904,360 + -0.6
Or see this region's nucleotide sequence