Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22790

Experiment: Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS22785 and HSERO_RS22790 are separated by 1 nucleotidesHSERO_RS22790 and HSERO_RS22795 are separated by 191 nucleotides HSERO_RS22785: HSERO_RS22785 - Type I site-specific deoxyribonuclease specificity subunit, at 5,228,943 to 5,230,208 _RS22785 HSERO_RS22790: HSERO_RS22790 - type I restriction-modification protein subunit M, at 5,230,210 to 5,232,792 _RS22790 HSERO_RS22795: HSERO_RS22795 - N-acetyltransferase, at 5,232,984 to 5,233,505 _RS22795 Position (kb) 5230 5231 5232 5233Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5229.212 kb on - strand, within HSERO_RS22785at 5229.212 kb on - strand, within HSERO_RS22785at 5229.231 kb on + strand, within HSERO_RS22785at 5229.242 kb on + strand, within HSERO_RS22785at 5229.260 kb on - strand, within HSERO_RS22785at 5229.271 kb on + strand, within HSERO_RS22785at 5229.271 kb on + strand, within HSERO_RS22785at 5229.271 kb on + strand, within HSERO_RS22785at 5229.279 kb on - strand, within HSERO_RS22785at 5229.279 kb on - strand, within HSERO_RS22785at 5229.279 kb on - strand, within HSERO_RS22785at 5229.281 kb on + strand, within HSERO_RS22785at 5229.284 kb on - strand, within HSERO_RS22785at 5229.289 kb on + strand, within HSERO_RS22785at 5229.309 kb on - strand, within HSERO_RS22785at 5229.321 kb on + strand, within HSERO_RS22785at 5229.347 kb on - strand, within HSERO_RS22785at 5229.390 kb on + strand, within HSERO_RS22785at 5229.413 kb on + strand, within HSERO_RS22785at 5229.415 kb on + strand, within HSERO_RS22785at 5229.415 kb on + strand, within HSERO_RS22785at 5229.423 kb on - strand, within HSERO_RS22785at 5229.448 kb on - strand, within HSERO_RS22785at 5229.455 kb on - strand, within HSERO_RS22785at 5229.463 kb on - strand, within HSERO_RS22785at 5229.472 kb on - strand, within HSERO_RS22785at 5229.498 kb on - strand, within HSERO_RS22785at 5229.500 kb on + strand, within HSERO_RS22785at 5229.510 kb on + strand, within HSERO_RS22785at 5229.512 kb on + strand, within HSERO_RS22785at 5229.520 kb on - strand, within HSERO_RS22785at 5229.520 kb on - strand, within HSERO_RS22785at 5229.520 kb on - strand, within HSERO_RS22785at 5229.520 kb on - strand, within HSERO_RS22785at 5229.566 kb on - strand, within HSERO_RS22785at 5229.567 kb on + strand, within HSERO_RS22785at 5229.608 kb on - strand, within HSERO_RS22785at 5229.622 kb on + strand, within HSERO_RS22785at 5229.623 kb on - strand, within HSERO_RS22785at 5229.636 kb on - strand, within HSERO_RS22785at 5229.637 kb on + strand, within HSERO_RS22785at 5229.646 kb on + strand, within HSERO_RS22785at 5229.646 kb on + strand, within HSERO_RS22785at 5229.697 kb on - strand, within HSERO_RS22785at 5229.697 kb on - strand, within HSERO_RS22785at 5229.707 kb on - strand, within HSERO_RS22785at 5229.713 kb on - strand, within HSERO_RS22785at 5229.715 kb on + strand, within HSERO_RS22785at 5229.721 kb on + strand, within HSERO_RS22785at 5229.721 kb on + strand, within HSERO_RS22785at 5229.721 kb on + strand, within HSERO_RS22785at 5229.721 kb on + strand, within HSERO_RS22785at 5229.728 kb on - strand, within HSERO_RS22785at 5229.729 kb on - strand, within HSERO_RS22785at 5229.729 kb on - strand, within HSERO_RS22785at 5229.729 kb on - strand, within HSERO_RS22785at 5229.729 kb on - strand, within HSERO_RS22785at 5229.729 kb on - strand, within HSERO_RS22785at 5229.736 kb on + strand, within HSERO_RS22785at 5229.736 kb on + strand, within HSERO_RS22785at 5229.736 kb on + strand, within HSERO_RS22785at 5229.739 kb on - strand, within HSERO_RS22785at 5229.739 kb on - strand, within HSERO_RS22785at 5229.744 kb on - strand, within HSERO_RS22785at 5229.744 kb on - strand, within HSERO_RS22785at 5229.744 kb on - strand, within HSERO_RS22785at 5229.744 kb on - strand, within HSERO_RS22785at 5229.762 kb on - strand, within HSERO_RS22785at 5229.793 kb on - strand, within HSERO_RS22785at 5229.810 kb on + strand, within HSERO_RS22785at 5229.818 kb on - strand, within HSERO_RS22785at 5229.818 kb on - strand, within HSERO_RS22785at 5229.826 kb on - strand, within HSERO_RS22785at 5229.874 kb on + strand, within HSERO_RS22785at 5229.876 kb on + strand, within HSERO_RS22785at 5229.876 kb on - strand, within HSERO_RS22785at 5229.936 kb on - strand, within HSERO_RS22785at 5229.958 kb on + strand, within HSERO_RS22785at 5229.958 kb on + strand, within HSERO_RS22785at 5230.007 kb on - strand, within HSERO_RS22785at 5230.014 kb on - strand, within HSERO_RS22785at 5230.024 kb on + strand, within HSERO_RS22785at 5230.024 kb on + strand, within HSERO_RS22785at 5230.025 kb on - strand, within HSERO_RS22785at 5230.032 kb on - strand, within HSERO_RS22785at 5230.032 kb on - strand, within HSERO_RS22785at 5230.032 kb on - strand, within HSERO_RS22785at 5230.032 kb on - strand, within HSERO_RS22785at 5230.032 kb on - strand, within HSERO_RS22785at 5230.080 kb on - strand, within HSERO_RS22785at 5230.122 kb on + strandat 5230.141 kb on - strandat 5230.144 kb on + strandat 5230.157 kb on - strandat 5230.161 kb on - strandat 5230.167 kb on + strandat 5230.171 kb on - strandat 5230.239 kb on + strandat 5230.296 kb on + strandat 5230.328 kb on - strandat 5230.457 kb on + strandat 5230.457 kb on + strandat 5230.465 kb on - strandat 5230.499 kb on + strand, within HSERO_RS22790at 5230.522 kb on - strand, within HSERO_RS22790at 5230.676 kb on + strand, within HSERO_RS22790at 5230.830 kb on + strand, within HSERO_RS22790at 5230.853 kb on + strand, within HSERO_RS22790at 5231.080 kb on + strand, within HSERO_RS22790at 5231.203 kb on - strand, within HSERO_RS22790at 5231.228 kb on - strand, within HSERO_RS22790at 5231.242 kb on + strand, within HSERO_RS22790at 5231.248 kb on + strand, within HSERO_RS22790at 5231.294 kb on + strand, within HSERO_RS22790at 5231.350 kb on + strand, within HSERO_RS22790at 5231.351 kb on - strand, within HSERO_RS22790at 5231.361 kb on + strand, within HSERO_RS22790at 5231.378 kb on - strand, within HSERO_RS22790at 5231.401 kb on - strand, within HSERO_RS22790at 5231.428 kb on - strand, within HSERO_RS22790at 5231.437 kb on + strand, within HSERO_RS22790at 5231.564 kb on - strand, within HSERO_RS22790at 5231.598 kb on + strand, within HSERO_RS22790at 5231.876 kb on + strand, within HSERO_RS22790at 5231.939 kb on + strand, within HSERO_RS22790at 5232.038 kb on - strand, within HSERO_RS22790at 5232.103 kb on + strand, within HSERO_RS22790at 5232.203 kb on - strand, within HSERO_RS22790at 5232.235 kb on - strand, within HSERO_RS22790at 5232.235 kb on - strand, within HSERO_RS22790at 5232.235 kb on - strand, within HSERO_RS22790at 5232.400 kb on + strand, within HSERO_RS22790at 5232.410 kb on + strand, within HSERO_RS22790at 5232.469 kb on + strand, within HSERO_RS22790at 5232.469 kb on + strand, within HSERO_RS22790at 5232.623 kb on - strandat 5232.624 kb on - strandat 5232.624 kb on - strandat 5232.647 kb on - strandat 5232.651 kb on + strandat 5232.651 kb on + strandat 5232.651 kb on + strandat 5232.682 kb on - strandat 5232.704 kb on + strandat 5232.719 kb on - strandat 5232.750 kb on - strandat 5232.792 kb on + strandat 5232.831 kb on + strandat 5232.851 kb on - strandat 5232.913 kb on + strandat 5232.913 kb on + strandat 5232.913 kb on + strandat 5232.913 kb on + strandat 5232.913 kb on + strandat 5232.921 kb on - strandat 5232.921 kb on - strandat 5232.989 kb on + strandat 5232.989 kb on + strandat 5233.011 kb on - strandat 5233.046 kb on - strand, within HSERO_RS22795at 5233.118 kb on + strand, within HSERO_RS22795at 5233.173 kb on - strand, within HSERO_RS22795at 5233.215 kb on + strand, within HSERO_RS22795at 5233.215 kb on + strand, within HSERO_RS22795at 5233.223 kb on - strand, within HSERO_RS22795at 5233.314 kb on + strand, within HSERO_RS22795at 5233.322 kb on - strand, within HSERO_RS22795at 5233.322 kb on - strand, within HSERO_RS22795at 5233.497 kb on + strandat 5233.505 kb on - strandat 5233.564 kb on + strandat 5233.596 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
remove
5,229,212 - HSERO_RS22785 0.21 -0.2
5,229,212 - HSERO_RS22785 0.21 -0.3
5,229,231 + HSERO_RS22785 0.23 +0.9
5,229,242 + HSERO_RS22785 0.24 +0.1
5,229,260 - HSERO_RS22785 0.25 +1.6
5,229,271 + HSERO_RS22785 0.26 +0.9
5,229,271 + HSERO_RS22785 0.26 -0.3
5,229,271 + HSERO_RS22785 0.26 -0.2
5,229,279 - HSERO_RS22785 0.27 +0.9
5,229,279 - HSERO_RS22785 0.27 +0.3
5,229,279 - HSERO_RS22785 0.27 -0.3
5,229,281 + HSERO_RS22785 0.27 +0.1
5,229,284 - HSERO_RS22785 0.27 -0.0
5,229,289 + HSERO_RS22785 0.27 +0.7
5,229,309 - HSERO_RS22785 0.29 -0.0
5,229,321 + HSERO_RS22785 0.30 +0.2
5,229,347 - HSERO_RS22785 0.32 +0.1
5,229,390 + HSERO_RS22785 0.35 +0.8
5,229,413 + HSERO_RS22785 0.37 +0.6
5,229,415 + HSERO_RS22785 0.37 +1.0
5,229,415 + HSERO_RS22785 0.37 -1.4
5,229,423 - HSERO_RS22785 0.38 +0.1
5,229,448 - HSERO_RS22785 0.40 +0.5
5,229,455 - HSERO_RS22785 0.40 +0.2
5,229,463 - HSERO_RS22785 0.41 -0.5
5,229,472 - HSERO_RS22785 0.42 +0.1
5,229,498 - HSERO_RS22785 0.44 +1.6
5,229,500 + HSERO_RS22785 0.44 +0.1
5,229,510 + HSERO_RS22785 0.45 +1.0
5,229,512 + HSERO_RS22785 0.45 -0.7
5,229,520 - HSERO_RS22785 0.46 +0.1
5,229,520 - HSERO_RS22785 0.46 +0.6
5,229,520 - HSERO_RS22785 0.46 +0.1
5,229,520 - HSERO_RS22785 0.46 +0.1
5,229,566 - HSERO_RS22785 0.49 -0.2
5,229,567 + HSERO_RS22785 0.49 +1.2
5,229,608 - HSERO_RS22785 0.53 -0.3
5,229,622 + HSERO_RS22785 0.54 +1.2
5,229,623 - HSERO_RS22785 0.54 +0.9
5,229,636 - HSERO_RS22785 0.55 -0.7
5,229,637 + HSERO_RS22785 0.55 -0.1
5,229,646 + HSERO_RS22785 0.56 +0.4
5,229,646 + HSERO_RS22785 0.56 +0.9
5,229,697 - HSERO_RS22785 0.60 +0.9
5,229,697 - HSERO_RS22785 0.60 +0.0
5,229,707 - HSERO_RS22785 0.60 +0.0
5,229,713 - HSERO_RS22785 0.61 -0.3
5,229,715 + HSERO_RS22785 0.61 -0.5
5,229,721 + HSERO_RS22785 0.61 +1.1
5,229,721 + HSERO_RS22785 0.61 +0.2
5,229,721 + HSERO_RS22785 0.61 +0.4
5,229,721 + HSERO_RS22785 0.61 -0.5
5,229,728 - HSERO_RS22785 0.62 -0.2
5,229,729 - HSERO_RS22785 0.62 -0.0
5,229,729 - HSERO_RS22785 0.62 +0.2
5,229,729 - HSERO_RS22785 0.62 -0.3
5,229,729 - HSERO_RS22785 0.62 +0.4
5,229,729 - HSERO_RS22785 0.62 -2.6
5,229,736 + HSERO_RS22785 0.63 -1.3
5,229,736 + HSERO_RS22785 0.63 -0.8
5,229,736 + HSERO_RS22785 0.63 +0.4
5,229,739 - HSERO_RS22785 0.63 -0.4
5,229,739 - HSERO_RS22785 0.63 -0.5
5,229,744 - HSERO_RS22785 0.63 -0.6
5,229,744 - HSERO_RS22785 0.63 +0.1
5,229,744 - HSERO_RS22785 0.63 -0.4
5,229,744 - HSERO_RS22785 0.63 -0.3
5,229,762 - HSERO_RS22785 0.65 +0.2
5,229,793 - HSERO_RS22785 0.67 -0.0
5,229,810 + HSERO_RS22785 0.68 +0.9
5,229,818 - HSERO_RS22785 0.69 +0.0
5,229,818 - HSERO_RS22785 0.69 +0.0
5,229,826 - HSERO_RS22785 0.70 -0.1
5,229,874 + HSERO_RS22785 0.74 +0.0
5,229,876 + HSERO_RS22785 0.74 +0.4
5,229,876 - HSERO_RS22785 0.74 +0.0
5,229,936 - HSERO_RS22785 0.78 +0.2
5,229,958 + HSERO_RS22785 0.80 +0.1
5,229,958 + HSERO_RS22785 0.80 -0.6
5,230,007 - HSERO_RS22785 0.84 +0.1
5,230,014 - HSERO_RS22785 0.85 -0.2
5,230,024 + HSERO_RS22785 0.85 -0.3
5,230,024 + HSERO_RS22785 0.85 -1.4
5,230,025 - HSERO_RS22785 0.85 +0.6
5,230,032 - HSERO_RS22785 0.86 +0.3
5,230,032 - HSERO_RS22785 0.86 -0.3
5,230,032 - HSERO_RS22785 0.86 +0.4
5,230,032 - HSERO_RS22785 0.86 -0.3
5,230,032 - HSERO_RS22785 0.86 -1.7
5,230,080 - HSERO_RS22785 0.90 -0.5
5,230,122 + -0.9
5,230,141 - +0.5
5,230,144 + -0.8
5,230,157 - +0.3
5,230,161 - +1.4
5,230,167 + +0.4
5,230,171 - -0.1
5,230,239 + -0.3
5,230,296 + -0.7
5,230,328 - -0.4
5,230,457 + +0.1
5,230,457 + -2.2
5,230,465 - +0.2
5,230,499 + HSERO_RS22790 0.11 -0.2
5,230,522 - HSERO_RS22790 0.12 +1.6
5,230,676 + HSERO_RS22790 0.18 +1.1
5,230,830 + HSERO_RS22790 0.24 +2.1
5,230,853 + HSERO_RS22790 0.25 +1.4
5,231,080 + HSERO_RS22790 0.34 -1.1
5,231,203 - HSERO_RS22790 0.38 +0.3
5,231,228 - HSERO_RS22790 0.39 +0.7
5,231,242 + HSERO_RS22790 0.40 -0.2
5,231,248 + HSERO_RS22790 0.40 +0.9
5,231,294 + HSERO_RS22790 0.42 -1.1
5,231,350 + HSERO_RS22790 0.44 -0.6
5,231,351 - HSERO_RS22790 0.44 -0.6
5,231,361 + HSERO_RS22790 0.45 -0.2
5,231,378 - HSERO_RS22790 0.45 +0.4
5,231,401 - HSERO_RS22790 0.46 +0.1
5,231,428 - HSERO_RS22790 0.47 -2.1
5,231,437 + HSERO_RS22790 0.48 -0.1
5,231,564 - HSERO_RS22790 0.52 -1.6
5,231,598 + HSERO_RS22790 0.54 -0.1
5,231,876 + HSERO_RS22790 0.64 +0.2
5,231,939 + HSERO_RS22790 0.67 -0.2
5,232,038 - HSERO_RS22790 0.71 +0.5
5,232,103 + HSERO_RS22790 0.73 +0.1
5,232,203 - HSERO_RS22790 0.77 +0.2
5,232,235 - HSERO_RS22790 0.78 +1.0
5,232,235 - HSERO_RS22790 0.78 +0.7
5,232,235 - HSERO_RS22790 0.78 +0.3
5,232,400 + HSERO_RS22790 0.85 -0.2
5,232,410 + HSERO_RS22790 0.85 +1.3
5,232,469 + HSERO_RS22790 0.87 +0.6
5,232,469 + HSERO_RS22790 0.87 -1.0
5,232,623 - +0.2
5,232,624 - +0.3
5,232,624 - +0.4
5,232,647 - +1.4
5,232,651 + -0.1
5,232,651 + +1.1
5,232,651 + -0.7
5,232,682 - -0.5
5,232,704 + -0.7
5,232,719 - -0.2
5,232,750 - +0.1
5,232,792 + -0.3
5,232,831 + -0.3
5,232,851 - +0.7
5,232,913 + +0.0
5,232,913 + +0.1
5,232,913 + +2.4
5,232,913 + +0.4
5,232,913 + +0.5
5,232,921 - +0.3
5,232,921 - +0.6
5,232,989 + +0.1
5,232,989 + -2.3
5,233,011 - -0.4
5,233,046 - HSERO_RS22795 0.12 +0.4
5,233,118 + HSERO_RS22795 0.26 -0.6
5,233,173 - HSERO_RS22795 0.36 -0.3
5,233,215 + HSERO_RS22795 0.44 +0.6
5,233,215 + HSERO_RS22795 0.44 -1.0
5,233,223 - HSERO_RS22795 0.46 +0.1
5,233,314 + HSERO_RS22795 0.63 -0.1
5,233,322 - HSERO_RS22795 0.65 -2.9
5,233,322 - HSERO_RS22795 0.65 -1.4
5,233,497 + +0.6
5,233,505 - +1.1
5,233,564 + -0.3
5,233,596 - -0.3

Or see this region's nucleotide sequence