Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17785
Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,084,902 | + | HSERO_RS17780 | 0.41 | -0.6 | |
4,084,910 | - | HSERO_RS17780 | 0.42 | +0.8 | |
4,084,910 | - | HSERO_RS17780 | 0.42 | +0.7 | |
4,084,910 | - | HSERO_RS17780 | 0.42 | +0.7 | |
4,084,929 | + | HSERO_RS17780 | 0.46 | -0.1 | |
4,085,079 | + | HSERO_RS17780 | 0.78 | +0.5 | |
4,085,092 | - | HSERO_RS17780 | 0.81 | +0.2 | |
4,085,285 | - | +0.1 | |||
4,085,375 | + | HSERO_RS17785 | 0.22 | -0.4 | |
4,085,581 | - | HSERO_RS17785 | 0.56 | +0.5 | |
4,085,581 | - | HSERO_RS17785 | 0.56 | -0.1 | |
4,085,674 | + | HSERO_RS17785 | 0.71 | +0.5 |
Or see this region's nucleotide sequence