Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06170
Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.001 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 1,387,108 | - | HSERO_RS06165 | 0.67 | -0.9 | |
| 1,387,324 | - | HSERO_RS06165 | 0.77 | -0.6 | |
| 1,387,543 | + | HSERO_RS06165 | 0.88 | -2.7 | |
| 1,387,543 | + | HSERO_RS06165 | 0.88 | -0.9 | |
| 1,387,676 | - | -1.8 | |||
| 1,387,691 | + | -0.5 | |||
| 1,387,872 | + | -0.4 | |||
| 1,387,993 | + | -0.2 | |||
| 1,388,376 | + | HSERO_RS06170 | 0.36 | -1.2 | |
| 1,388,384 | - | HSERO_RS06170 | 0.37 | -1.8 | |
| 1,389,184 | - | HSERO_RS06175 | 0.11 | -0.8 | |
| 1,389,240 | - | HSERO_RS06175 | 0.16 | -0.3 | |
| 1,389,310 | + | HSERO_RS06175 | 0.22 | -0.9 | |
| 1,389,628 | - | HSERO_RS06175 | 0.50 | -1.0 | |
| 1,389,644 | + | HSERO_RS06175 | 0.52 | -1.6 | |
| 1,389,825 | - | HSERO_RS06175 | 0.68 | +0.5 |
Or see this region's nucleotide sequence