Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01930

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01925 and HSERO_RS01930 are separated by 95 nucleotidesHSERO_RS01930 and HSERO_RS01935 are separated by 134 nucleotidesHSERO_RS01935 and HSERO_RS01940 are separated by 96 nucleotides HSERO_RS01925: HSERO_RS01925 - acetyl-CoA carboxylase biotin carboxylase subunit, at 423,308 to 424,687 _RS01925 HSERO_RS01930: HSERO_RS01930 - acetyl-CoA carboxylase, at 424,783 to 425,256 _RS01930 HSERO_RS01935: HSERO_RS01935 - 3-dehydroquinate dehydratase, at 425,391 to 425,828 _RS01935 HSERO_RS01940: HSERO_RS01940 - thioredoxin, at 425,925 to 426,446 _RS01940 Position (kb) 424 425 426Strain fitness (log2 ratio) -1 0 1at 425.397 kb on - strandat 425.456 kb on - strand, within HSERO_RS01935at 425.573 kb on - strand, within HSERO_RS01935at 425.779 kb on - strand, within HSERO_RS01935

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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425,397 - +0.2
425,456 - HSERO_RS01935 0.15 +1.1
425,573 - HSERO_RS01935 0.42 +0.8
425,779 - HSERO_RS01935 0.89 -0.3

Or see this region's nucleotide sequence