Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18775

Experiment: CDM1 without Cysteine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Cysteine
2,003,691	-				+0.7
2,003,718	-				-0.1
2,003,736	-				+0.3
2,003,754	+				-0.9
2,003,754	+				-2.2
2,003,833	-				+0.0
2,003,873	+				-0.7
2,003,873	+				-1.1
2,003,875	+				-0.7
2,003,914	+				-2.5
2,003,919	+				+1.0
2,003,927	-				-0.3
2,003,949	-		BBR_RS18770	0.11	+0.2
2,003,949	-		BBR_RS18770	0.11	-1.0
2,003,949	-		BBR_RS18770	0.11	+0.3
2,003,956	+		BBR_RS18770	0.12	-0.6
2,003,968	+		BBR_RS18770	0.14	-0.4
2,003,976	-		BBR_RS18770	0.15	+0.0
2,003,978	+		BBR_RS18770	0.15	-0.2
2,003,997	-		BBR_RS18770	0.18	-0.8
2,003,997	-		BBR_RS18770	0.18	-0.1
2,003,999	+		BBR_RS18770	0.18	-0.7
2,003,999	+		BBR_RS18770	0.18	+0.2
2,003,999	+		BBR_RS18770	0.18	-0.7
2,004,002	-		BBR_RS18770	0.18	-0.2
2,004,021	-		BBR_RS18770	0.21	-0.4
2,004,033	+		BBR_RS18770	0.22	+0.2
2,004,034	+		BBR_RS18770	0.23	+0.2
2,004,034	+		BBR_RS18770	0.23	-0.0
2,004,034	+		BBR_RS18770	0.23	+0.5
2,004,041	-		BBR_RS18770	0.24	+0.8
2,004,042	-		BBR_RS18770	0.24	-0.3
2,004,042	-		BBR_RS18770	0.24	-3.0
2,004,042	-		BBR_RS18770	0.24	-1.2
2,004,076	+		BBR_RS18770	0.28	-2.4
2,004,100	-		BBR_RS18770	0.32	-1.9
2,004,166	+		BBR_RS18770	0.41	-0.8
2,004,166	+		BBR_RS18770	0.41	-0.8
2,004,166	+		BBR_RS18770	0.41	-1.1
2,004,166	+		BBR_RS18770	0.41	-0.4
2,004,166	+		BBR_RS18770	0.41	-0.6
2,004,171	+		BBR_RS18770	0.41	+0.3
2,004,171	+		BBR_RS18770	0.41	-0.6
2,004,174	-		BBR_RS18770	0.42	-1.4
2,004,174	-		BBR_RS18770	0.42	+0.3
2,004,174	-		BBR_RS18770	0.42	+0.2
2,004,174	-		BBR_RS18770	0.42	+1.3
2,004,181	+		BBR_RS18770	0.43	+1.2
2,004,189	-		BBR_RS18770	0.44	+0.9
2,004,224	+		BBR_RS18770	0.49	-1.3
2,004,224	+		BBR_RS18770	0.49	+0.2
2,004,226	+		BBR_RS18770	0.49	-0.4
2,004,232	-		BBR_RS18770	0.50	-1.7
2,004,247	+		BBR_RS18770	0.52	-0.1
2,004,249	+		BBR_RS18770	0.52	+0.0
2,004,249	+		BBR_RS18770	0.52	+0.3
2,004,249	+		BBR_RS18770	0.52	+0.9
2,004,249	+		BBR_RS18770	0.52	-1.0
2,004,257	-		BBR_RS18770	0.53	-1.4
2,004,257	-		BBR_RS18770	0.53	-0.2
2,004,257	-		BBR_RS18770	0.53	-0.6
2,004,257	-		BBR_RS18770	0.53	-1.7
2,004,257	-		BBR_RS18770	0.53	-1.0
2,004,257	-		BBR_RS18770	0.53	-0.2
2,004,257	-		BBR_RS18770	0.53	+0.1
2,004,281	-		BBR_RS18770	0.57	-0.2
2,004,292	+		BBR_RS18770	0.58	+0.7
2,004,332	+		BBR_RS18770	0.64	+0.2
2,004,332	+		BBR_RS18770	0.64	-1.5
2,004,332	+		BBR_RS18770	0.64	-1.9
2,004,337	+		BBR_RS18770	0.64	-1.0
2,004,340	-		BBR_RS18770	0.65	+0.2
2,004,340	-		BBR_RS18770	0.65	-2.1
2,004,340	-		BBR_RS18770	0.65	-2.0
2,004,340	-		BBR_RS18770	0.65	-0.5
2,004,351	+		BBR_RS18770	0.66	-0.9
2,004,351	+		BBR_RS18770	0.66	-0.6
2,004,359	-		BBR_RS18770	0.67	-0.6
2,004,377	-		BBR_RS18770	0.70	-2.3
2,004,389	-		BBR_RS18770	0.71	-1.3
2,004,389	-		BBR_RS18770	0.71	-1.7
2,004,391	+		BBR_RS18770	0.72	-2.7
2,004,414	+		BBR_RS18770	0.75	-0.4
2,004,426	-		BBR_RS18770	0.76	-0.0
2,004,445	+		BBR_RS18770	0.79	-0.9
2,004,460	+		BBR_RS18770	0.81	-0.4
2,004,470	-		BBR_RS18770	0.82	-0.2
2,004,470	-		BBR_RS18770	0.82	+0.3
2,004,500	+		BBR_RS18770	0.87	-2.0
2,004,514	+		BBR_RS18770	0.88	+0.2
2,004,514	-		BBR_RS18770	0.88	-0.6
2,004,514	-		BBR_RS18770	0.88	-2.6
2,004,514	-		BBR_RS18770	0.88	-1.2
2,004,529	+				-1.3
2,004,538	+				-0.8
2,004,546	-				-0.9
2,004,577	-				+0.3
2,004,577	-				-1.0
2,004,597	+				+0.0
2,004,599	+				+0.7
2,004,605	-				-0.2
2,004,606	-				+0.2
2,004,607	-				+0.7
2,004,653	-				-0.3
2,004,704	+				+1.9
2,004,704	+				-0.5
2,004,704	+				-0.9
2,004,704	+				+1.4
2,004,712	-				+1.2
2,004,712	-				-0.7
2,004,719	+				+1.0
2,004,720	+				+0.2
2,004,749	+		BBR_RS18775	0.12	-0.3
2,004,763	-		BBR_RS18775	0.13	-0.7
2,004,789	+		BBR_RS18775	0.17	-0.1
2,004,797	-		BBR_RS18775	0.18	-0.1
2,004,797	-		BBR_RS18775	0.18	+0.5
2,004,799	+		BBR_RS18775	0.18	-0.1
2,004,824	+		BBR_RS18775	0.21	+0.6
2,004,832	-		BBR_RS18775	0.22	+0.3
2,004,838	+		BBR_RS18775	0.23	-2.1
2,004,852	+		BBR_RS18775	0.25	+0.6
2,004,852	+		BBR_RS18775	0.25	-2.4
2,004,852	+		BBR_RS18775	0.25	+1.2
2,004,852	+		BBR_RS18775	0.25	+0.3
2,004,860	-		BBR_RS18775	0.26	+0.7
2,004,860	-		BBR_RS18775	0.26	+0.5
2,004,876	+		BBR_RS18775	0.28	-0.7
2,004,884	-		BBR_RS18775	0.29	+0.5
2,004,921	+		BBR_RS18775	0.33	+0.6
2,004,921	+		BBR_RS18775	0.33	+0.0
2,004,928	+		BBR_RS18775	0.34	+1.5
2,004,928	+		BBR_RS18775	0.34	+0.3
2,004,929	-		BBR_RS18775	0.34	+0.8
2,004,929	-		BBR_RS18775	0.34	-1.4
2,004,929	-		BBR_RS18775	0.34	+0.4
2,004,929	-		BBR_RS18775	0.34	-0.3
2,004,929	-		BBR_RS18775	0.34	-0.4
2,004,929	-		BBR_RS18775	0.34	+0.3
2,004,929	-		BBR_RS18775	0.34	-1.8
2,004,965	-		BBR_RS18775	0.39	+0.7
2,004,976	+		BBR_RS18775	0.40	+0.5
2,004,979	+		BBR_RS18775	0.40	-0.2
2,004,984	-		BBR_RS18775	0.41	+0.5
2,004,984	-		BBR_RS18775	0.41	+0.5
2,004,984	-		BBR_RS18775	0.41	+1.0
2,004,984	-		BBR_RS18775	0.41	-0.8
2,004,984	-		BBR_RS18775	0.41	-0.5
2,004,985	-		BBR_RS18775	0.41	-0.2
2,004,989	-		BBR_RS18775	0.42	-0.1
2,004,989	-		BBR_RS18775	0.42	+1.0
2,005,006	+		BBR_RS18775	0.44	+1.1
2,005,050	+		BBR_RS18775	0.49	+0.2
2,005,050	+		BBR_RS18775	0.49	-0.2
2,005,050	+		BBR_RS18775	0.49	-0.9
2,005,050	+		BBR_RS18775	0.49	-0.7
2,005,050	+		BBR_RS18775	0.49	+0.8
2,005,050	+		BBR_RS18775	0.49	+0.3
2,005,052	+		BBR_RS18775	0.50	-0.5
2,005,057	+		BBR_RS18775	0.50	-3.4
2,005,058	-		BBR_RS18775	0.50	+0.9
2,005,058	-		BBR_RS18775	0.50	+0.2
2,005,060	-		BBR_RS18775	0.51	-0.1
2,005,070	-		BBR_RS18775	0.52	+0.5
2,005,070	-		BBR_RS18775	0.52	+0.3
2,005,070	-		BBR_RS18775	0.52	+0.6
2,005,070	-		BBR_RS18775	0.52	+1.4
2,005,070	-		BBR_RS18775	0.52	+0.5
2,005,070	-		BBR_RS18775	0.52	-0.1
2,005,077	-		BBR_RS18775	0.53	+1.4
2,005,079	-		BBR_RS18775	0.53	+0.4
2,005,079	-		BBR_RS18775	0.53	+0.9
2,005,094	+		BBR_RS18775	0.55	+0.1
2,005,094	+		BBR_RS18775	0.55	+0.3
2,005,104	+		BBR_RS18775	0.56	+0.5
2,005,124	-		BBR_RS18775	0.59	-0.3
2,005,124	-		BBR_RS18775	0.59	+0.7
2,005,126	+		BBR_RS18775	0.59	+1.6
2,005,159	+		BBR_RS18775	0.63	+0.6
2,005,162	+		BBR_RS18775	0.63	+0.6
2,005,175	-		BBR_RS18775	0.65	+0.7
2,005,177	-		BBR_RS18775	0.65	+0.1
2,005,177	-		BBR_RS18775	0.65	+1.0
2,005,198	-		BBR_RS18775	0.68	+0.3
2,005,205	+		BBR_RS18775	0.69	+2.3
2,005,205	+		BBR_RS18775	0.69	-0.0
2,005,230	-		BBR_RS18775	0.72	+0.6
2,005,243	-		BBR_RS18775	0.73	+0.7
2,005,249	-		BBR_RS18775	0.74	+0.4
2,005,249	-		BBR_RS18775	0.74	+1.3
2,005,262	+		BBR_RS18775	0.76	+0.7
2,005,269	+		BBR_RS18775	0.77	-0.0
2,005,270	-		BBR_RS18775	0.77	+1.1
2,005,270	-		BBR_RS18775	0.77	+1.0
2,005,282	-		BBR_RS18775	0.78	-0.4
2,005,298	+		BBR_RS18775	0.80	-0.7
2,005,298	+		BBR_RS18775	0.80	-0.3
2,005,299	-		BBR_RS18775	0.80	+0.9
2,005,300	-		BBR_RS18775	0.81	+1.5
2,005,338	+		BBR_RS18775	0.85	-0.0
2,005,340	+		BBR_RS18775	0.86	-1.6
2,005,340	+		BBR_RS18775	0.86	-0.5
2,005,348	-		BBR_RS18775	0.87	+0.9
2,005,352	-		BBR_RS18775	0.87	+0.5
2,005,403	+				+1.2
2,005,403	+				-0.0
2,005,424	-				+1.4
2,005,435	+				+0.4
2,005,435	+				-0.1
2,005,653	-				+1.0
2,005,657	-				+1.7
2,005,657	-				+1.1
2,005,666	+				-0.5
2,005,666	+				-0.2
2,005,677	+				+0.3
2,005,677	+				+0.1
2,005,713	-				+0.5
2,005,713	-				+0.7
2,005,718	-				+0.5
2,005,731	+				+0.7
2,005,763	+		BBR_RS18785	0.12	-1.5
2,005,770	+		BBR_RS18785	0.13	-2.1
2,005,771	-		BBR_RS18785	0.13	+0.8
2,005,783	+		BBR_RS18785	0.14	+0.8
2,005,783	-		BBR_RS18785	0.14	+0.7
2,005,820	+		BBR_RS18785	0.19	-0.7
2,005,828	-		BBR_RS18785	0.20	-2.6
2,005,828	-		BBR_RS18785	0.20	+0.0
2,005,829	-		BBR_RS18785	0.20	+1.1
2,005,843	+		BBR_RS18785	0.22	+0.3
2,005,846	+		BBR_RS18785	0.22	+2.8
2,005,851	-		BBR_RS18785	0.23	+2.2
2,005,859	-		BBR_RS18785	0.24	+1.0
2,005,866	-		BBR_RS18785	0.25	+0.8
2,005,877	+		BBR_RS18785	0.26	+0.2
2,005,882	+		BBR_RS18785	0.27	-0.3
2,005,882	+		BBR_RS18785	0.27	-0.8
2,005,882	+		BBR_RS18785	0.27	-0.7
2,005,885	-		BBR_RS18785	0.27	+0.2
2,005,890	-		BBR_RS18785	0.28	+1.0
2,005,892	-		BBR_RS18785	0.28	-1.4
2,005,902	+		BBR_RS18785	0.29	-0.8
2,005,902	+		BBR_RS18785	0.29	-2.7
2,005,902	+		BBR_RS18785	0.29	+1.3
2,005,902	+		BBR_RS18785	0.29	+0.4
2,005,905	-		BBR_RS18785	0.30	+2.4
2,005,910	-		BBR_RS18785	0.30	+0.1
2,005,910	-		BBR_RS18785	0.30	-0.7
2,005,910	-		BBR_RS18785	0.30	-1.2
2,005,910	-		BBR_RS18785	0.30	+0.6
2,005,910	-		BBR_RS18785	0.30	+0.5
2,005,910	-		BBR_RS18785	0.30	+0.8
2,005,946	+		BBR_RS18785	0.35	-1.0
2,005,946	+		BBR_RS18785	0.35	-1.0
2,005,956	+		BBR_RS18785	0.36	+0.2
2,005,956	+		BBR_RS18785	0.36	-0.5
2,005,956	+		BBR_RS18785	0.36	+1.8
2,005,956	+		BBR_RS18785	0.36	+0.9
2,005,956	+		BBR_RS18785	0.36	-1.1
2,005,956	+		BBR_RS18785	0.36	+0.0
2,005,964	-		BBR_RS18785	0.37	-0.8
2,005,964	-		BBR_RS18785	0.37	+0.3
2,005,964	-		BBR_RS18785	0.37	+0.8
2,005,964	-		BBR_RS18785	0.37	+0.4
2,005,964	-		BBR_RS18785	0.37	+1.6
2,005,969	+		BBR_RS18785	0.38	-3.3
2,005,969	+		BBR_RS18785	0.38	+0.6
2,005,969	+		BBR_RS18785	0.38	+1.2
2,005,969	+		BBR_RS18785	0.38	-1.2
2,005,977	-		BBR_RS18785	0.39	+0.6
2,005,977	-		BBR_RS18785	0.39	-0.0
2,005,977	-		BBR_RS18785	0.39	-0.4
2,005,977	-		BBR_RS18785	0.39	-1.5
2,005,977	-		BBR_RS18785	0.39	+0.3
2,005,977	-		BBR_RS18785	0.39	-0.7
2,005,977	-		BBR_RS18785	0.39	+0.2
2,005,977	-		BBR_RS18785	0.39	+1.0
2,005,977	-		BBR_RS18785	0.39	+1.5
2,005,977	-		BBR_RS18785	0.39	+0.6
2,005,977	-		BBR_RS18785	0.39	+0.6
2,005,979	+		BBR_RS18785	0.39	+1.5
2,005,981	+		BBR_RS18785	0.39	-1.7
2,005,981	+		BBR_RS18785	0.39	-2.2
2,005,981	+		BBR_RS18785	0.39	+0.5
2,005,981	+		BBR_RS18785	0.39	-0.5
2,005,981	+		BBR_RS18785	0.39	-0.9
2,005,987	-		BBR_RS18785	0.40	-0.2
2,005,987	-		BBR_RS18785	0.40	+0.8
2,005,987	-		BBR_RS18785	0.40	+0.9
2,005,989	-		BBR_RS18785	0.40	-0.3
2,005,989	-		BBR_RS18785	0.40	+1.1
2,005,989	-		BBR_RS18785	0.40	-0.4
2,005,994	-		BBR_RS18785	0.41	+0.9
2,005,999	-		BBR_RS18785	0.41	+0.2
2,005,999	-		BBR_RS18785	0.41	+0.2
2,006,009	-		BBR_RS18785	0.43	-0.7
2,006,034	-		BBR_RS18785	0.46	-0.3
2,006,038	+		BBR_RS18785	0.46	+0.7
2,006,038	+		BBR_RS18785	0.46	-0.6
2,006,038	+		BBR_RS18785	0.46	+0.3
2,006,038	+		BBR_RS18785	0.46	-1.2
2,006,038	+		BBR_RS18785	0.46	-0.2
2,006,046	-		BBR_RS18785	0.47	+0.3
2,006,046	-		BBR_RS18785	0.47	+0.9
2,006,046	-		BBR_RS18785	0.47	+1.7
2,006,070	+		BBR_RS18785	0.50	+1.2
2,006,070	+		BBR_RS18785	0.50	+0.1
2,006,078	-		BBR_RS18785	0.51	-0.2
2,006,081	+		BBR_RS18785	0.52	+1.1
2,006,088	-		BBR_RS18785	0.52	-0.5
2,006,097	-		BBR_RS18785	0.54	+1.2
2,006,118	+		BBR_RS18785	0.56	-3.9
2,006,152	+		BBR_RS18785	0.60	-0.6
2,006,155	-		BBR_RS18785	0.61	-0.1
2,006,155	-		BBR_RS18785	0.61	-0.3
2,006,155	-		BBR_RS18785	0.61	+0.6
2,006,160	-		BBR_RS18785	0.61	-0.1
2,006,165	-		BBR_RS18785	0.62	+0.0
2,006,175	-		BBR_RS18785	0.63	+0.5
2,006,175	-		BBR_RS18785	0.63	-0.9
2,006,186	-		BBR_RS18785	0.65	+0.0
2,006,200	+		BBR_RS18785	0.66	-2.2
2,006,219	+		BBR_RS18785	0.69	-0.8
2,006,242	+		BBR_RS18785	0.72	-1.1
2,006,250	+		BBR_RS18785	0.73	-1.4
2,006,275	+		BBR_RS18785	0.76	+0.3
2,006,277	-		BBR_RS18785	0.76	-0.8
2,006,326	+		BBR_RS18785	0.82	-2.8
2,006,379	+		BBR_RS18785	0.89	-2.3
2,006,389	-				+1.1
2,006,396	+				-1.1
2,006,404	-				-0.6
2,006,404	-				+0.4
2,006,413	-				-1.8
2,006,443	-				+0.1