Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10055

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10045 and AO356_10050 overlap by 4 nucleotidesAO356_10050 and AO356_10055 overlap by 4 nucleotidesAO356_10055 and AO356_10060 are separated by 68 nucleotides AO356_10045: AO356_10045 - glucose-1-phosphate thymidylyltransferase, at 2,267,509 to 2,268,384 _10045 AO356_10050: AO356_10050 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,268,381 to 2,268,926 _10050 AO356_10055: AO356_10055 - dTDP-4-dehydrorhamnose reductase, at 2,268,923 to 2,269,807 _10055 AO356_10060: AO356_10060 - ATPase, at 2,269,876 to 2,271,684 _10060 Position (kb) 2268 2269 2270Strain fitness (log2 ratio) -3 -2 -1 0 1at 2269.813 kb on + strandat 2269.813 kb on + strandat 2269.819 kb on + strandat 2269.820 kb on - strandat 2269.820 kb on - strandat 2269.820 kb on - strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.837 kb on + strandat 2269.838 kb on - strandat 2269.838 kb on - strandat 2269.838 kb on - strandat 2269.838 kb on - strandat 2269.838 kb on - strandat 2269.843 kb on + strandat 2269.843 kb on + strandat 2269.843 kb on + strandat 2269.843 kb on + strandat 2269.844 kb on - strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.846 kb on + strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.847 kb on - strandat 2269.978 kb on + strandat 2269.979 kb on - strandat 2270.026 kb on + strandat 2270.026 kb on + strandat 2270.026 kb on + strandat 2270.026 kb on + strandat 2270.026 kb on + strandat 2270.026 kb on + strandat 2270.027 kb on - strandat 2270.027 kb on - strandat 2270.027 kb on - strandat 2270.027 kb on - strandat 2270.060 kb on - strand, within AO356_10060at 2270.060 kb on - strand, within AO356_10060at 2270.060 kb on - strand, within AO356_10060at 2270.060 kb on - strand, within AO356_10060at 2270.197 kb on + strand, within AO356_10060at 2270.197 kb on + strand, within AO356_10060at 2270.197 kb on + strand, within AO356_10060at 2270.197 kb on + strand, within AO356_10060at 2270.197 kb on + strand, within AO356_10060at 2270.197 kb on + strand, within AO356_10060at 2270.198 kb on - strand, within AO356_10060at 2270.198 kb on - strand, within AO356_10060at 2270.287 kb on + strand, within AO356_10060at 2270.288 kb on - strand, within AO356_10060at 2270.359 kb on + strand, within AO356_10060at 2270.359 kb on + strand, within AO356_10060at 2270.359 kb on + strand, within AO356_10060at 2270.360 kb on - strand, within AO356_10060at 2270.360 kb on - strand, within AO356_10060at 2270.360 kb on - strand, within AO356_10060at 2270.576 kb on + strand, within AO356_10060at 2270.585 kb on - strand, within AO356_10060at 2270.794 kb on + strand, within AO356_10060at 2270.794 kb on + strand, within AO356_10060at 2270.795 kb on - strand, within AO356_10060

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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2,269,813 + -0.1
2,269,813 + +0.4
2,269,819 + +0.1
2,269,820 - +0.6
2,269,820 - -0.1
2,269,820 - -0.4
2,269,837 + -0.8
2,269,837 + +0.9
2,269,837 + -2.8
2,269,837 + +1.2
2,269,837 + +0.3
2,269,837 + +0.2
2,269,838 - +1.0
2,269,838 - -0.3
2,269,838 - -0.0
2,269,838 - +0.4
2,269,838 - +1.1
2,269,843 + +0.6
2,269,843 + -0.1
2,269,843 + +1.4
2,269,843 + +0.6
2,269,844 - -0.4
2,269,846 + +0.9
2,269,846 + +0.2
2,269,846 + +0.6
2,269,846 + +0.0
2,269,846 + +0.5
2,269,846 + +0.9
2,269,847 - +0.4
2,269,847 - +0.0
2,269,847 - -0.1
2,269,847 - +0.5
2,269,847 - -0.3
2,269,847 - +0.4
2,269,847 - -0.4
2,269,847 - +0.5
2,269,847 - +0.2
2,269,847 - +0.5
2,269,978 + -0.3
2,269,979 - +1.2
2,270,026 + +0.3
2,270,026 + +0.8
2,270,026 + -0.8
2,270,026 + -0.4
2,270,026 + +0.4
2,270,026 + -0.3
2,270,027 - +0.9
2,270,027 - -0.6
2,270,027 - -0.6
2,270,027 - -0.3
2,270,060 - AO356_10060 0.10 -0.7
2,270,060 - AO356_10060 0.10 -1.0
2,270,060 - AO356_10060 0.10 +0.8
2,270,060 - AO356_10060 0.10 -0.1
2,270,197 + AO356_10060 0.18 +0.4
2,270,197 + AO356_10060 0.18 +0.3
2,270,197 + AO356_10060 0.18 +0.1
2,270,197 + AO356_10060 0.18 +0.6
2,270,197 + AO356_10060 0.18 -0.5
2,270,197 + AO356_10060 0.18 +1.2
2,270,198 - AO356_10060 0.18 -0.8
2,270,198 - AO356_10060 0.18 -0.4
2,270,287 + AO356_10060 0.23 +0.9
2,270,288 - AO356_10060 0.23 +0.9
2,270,359 + AO356_10060 0.27 +0.4
2,270,359 + AO356_10060 0.27 -0.0
2,270,359 + AO356_10060 0.27 +0.2
2,270,360 - AO356_10060 0.27 -1.1
2,270,360 - AO356_10060 0.27 -0.8
2,270,360 - AO356_10060 0.27 +1.0
2,270,576 + AO356_10060 0.39 -0.0
2,270,585 - AO356_10060 0.39 +0.7
2,270,794 + AO356_10060 0.51 -2.0
2,270,794 + AO356_10060 0.51 +0.2
2,270,795 - AO356_10060 0.51 +0.1

Or see this region's nucleotide sequence