Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09390

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09385 and AO356_09390 are separated by 179 nucleotidesAO356_09390 and AO356_09395 are separated by 4 nucleotides AO356_09385: AO356_09385 - 3-dehydroquinate synthase, at 2,125,514 to 2,126,614 _09385 AO356_09390: AO356_09390 - shikimate kinase, at 2,126,794 to 2,127,312 _09390 AO356_09395: AO356_09395 - fimbrial protein, at 2,127,317 to 2,129,404 _09395 Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -2 -1 0 1at 2126.659 kb on - strandat 2126.681 kb on - strandat 2126.681 kb on - strandat 2126.681 kb on - strandat 2126.681 kb on - strandat 2127.426 kb on + strandat 2127.427 kb on - strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.458 kb on + strandat 2127.458 kb on + strandat 2127.458 kb on + strandat 2127.458 kb on + strandat 2127.459 kb on - strandat 2127.459 kb on - strandat 2127.459 kb on - strandat 2127.475 kb on + strandat 2127.717 kb on + strand, within AO356_09395at 2127.877 kb on + strand, within AO356_09395at 2127.877 kb on + strand, within AO356_09395at 2127.878 kb on - strand, within AO356_09395at 2127.878 kb on - strand, within AO356_09395at 2127.923 kb on - strand, within AO356_09395at 2128.032 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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2,126,659 - +0.7
2,126,681 - -0.6
2,126,681 - +0.4
2,126,681 - -1.8
2,126,681 - -0.4
2,127,426 + +1.7
2,127,427 - -1.1
2,127,454 + +0.2
2,127,454 + +0.6
2,127,454 + -0.4
2,127,454 + +0.8
2,127,454 + +0.3
2,127,454 + +1.1
2,127,454 + +0.9
2,127,455 - +0.6
2,127,455 - +0.4
2,127,455 - -0.9
2,127,455 - +0.9
2,127,455 - -1.0
2,127,455 - +0.3
2,127,455 - -0.2
2,127,455 - -0.1
2,127,455 - +0.1
2,127,455 - +0.0
2,127,455 - -0.4
2,127,455 - +0.2
2,127,458 + +0.3
2,127,458 + +1.3
2,127,458 + +1.0
2,127,458 + +1.0
2,127,459 - -0.9
2,127,459 - +0.4
2,127,459 - -1.2
2,127,475 + -0.4
2,127,717 + AO356_09395 0.19 +1.0
2,127,877 + AO356_09395 0.27 +0.0
2,127,877 + AO356_09395 0.27 +0.4
2,127,878 - AO356_09395 0.27 -0.6
2,127,878 - AO356_09395 0.27 +0.4
2,127,923 - AO356_09395 0.29 +0.2
2,128,032 + AO356_09395 0.34 -1.1
2,128,254 + AO356_09395 0.45 +0.0
2,128,254 + AO356_09395 0.45 -0.1
2,128,254 + AO356_09395 0.45 +0.5
2,128,254 + AO356_09395 0.45 +0.3
2,128,254 + AO356_09395 0.45 +0.2
2,128,254 + AO356_09395 0.45 -0.2
2,128,254 + AO356_09395 0.45 -0.4
2,128,254 + AO356_09395 0.45 +0.4
2,128,254 + AO356_09395 0.45 +0.4
2,128,254 + AO356_09395 0.45 +0.1
2,128,255 - AO356_09395 0.45 +0.1
2,128,255 - AO356_09395 0.45 -0.1
2,128,255 - AO356_09395 0.45 +0.4
2,128,255 - AO356_09395 0.45 -0.2
2,128,255 - AO356_09395 0.45 -0.3

Or see this region's nucleotide sequence