Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000724 and ABIE53_000725 are separated by 78 nucleotides ABIE53_000725 and ABIE53_000726 are separated by 61 nucleotides ABIE53_000726 and ABIE53_000727 are separated by 68 nucleotides
ABIE53_000724: ABIE53_000724 - CPA2 family monovalent cation:H+ antiporter-2, at 777,082 to 779,136
_000724
ABIE53_000725: ABIE53_000725 - adenine phosphoribosyltransferase, at 779,215 to 779,781
_000725
ABIE53_000726: ABIE53_000726 - threonine/homoserine/homoserine lactone efflux protein, at 779,843 to 780,469
_000726
ABIE53_000727: ABIE53_000727 - 8-oxo-dGTP pyrophosphatase MutT (NUDIX family), at 780,538 to 781,389
_000727
Position (kb) 779
780
781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 778.893 kb on - strand, within ABIE53_000724 at 778.893 kb on - strand, within ABIE53_000724 at 778.912 kb on - strand, within ABIE53_000724 at 778.912 kb on - strand, within ABIE53_000724 at 778.957 kb on + strand at 779.134 kb on + strand at 779.192 kb on + strand at 779.193 kb on - strand at 779.193 kb on - strand at 779.257 kb on + strand at 779.257 kb on + strand at 779.258 kb on - strand at 779.383 kb on + strand, within ABIE53_000725 at 779.383 kb on + strand, within ABIE53_000725 at 779.384 kb on - strand, within ABIE53_000725 at 779.384 kb on - strand, within ABIE53_000725 at 779.384 kb on - strand, within ABIE53_000725 at 779.384 kb on - strand, within ABIE53_000725 at 779.384 kb on - strand, within ABIE53_000725 at 779.384 kb on - strand, within ABIE53_000725 at 779.384 kb on - strand, within ABIE53_000725 at 779.385 kb on + strand, within ABIE53_000725 at 779.385 kb on + strand, within ABIE53_000725 at 779.386 kb on - strand, within ABIE53_000725 at 779.386 kb on - strand, within ABIE53_000725 at 779.386 kb on - strand, within ABIE53_000725 at 779.386 kb on - strand, within ABIE53_000725 at 779.386 kb on - strand, within ABIE53_000725 at 779.386 kb on - strand, within ABIE53_000725 at 779.386 kb on - strand, within ABIE53_000725 at 779.388 kb on - strand, within ABIE53_000725 at 779.404 kb on + strand, within ABIE53_000725 at 779.404 kb on + strand, within ABIE53_000725 at 779.404 kb on + strand, within ABIE53_000725 at 779.404 kb on + strand, within ABIE53_000725 at 779.404 kb on + strand, within ABIE53_000725 at 779.405 kb on - strand, within ABIE53_000725 at 779.455 kb on + strand, within ABIE53_000725 at 779.455 kb on + strand, within ABIE53_000725 at 779.456 kb on - strand, within ABIE53_000725 at 779.506 kb on + strand, within ABIE53_000725 at 779.507 kb on - strand, within ABIE53_000725 at 779.507 kb on - strand, within ABIE53_000725 at 779.528 kb on - strand, within ABIE53_000725 at 779.528 kb on - strand, within ABIE53_000725 at 779.752 kb on + strand at 779.752 kb on + strand at 779.752 kb on + strand at 779.753 kb on - strand at 779.754 kb on + strand at 779.754 kb on + strand at 779.754 kb on + strand at 779.755 kb on - strand at 779.831 kb on + strand at 779.831 kb on + strand at 779.832 kb on - strand at 779.832 kb on - strand at 779.835 kb on + strand at 779.835 kb on + strand at 779.835 kb on + strand at 779.835 kb on + strand at 779.835 kb on + strand at 779.836 kb on - strand at 779.836 kb on - strand at 779.836 kb on - strand at 780.080 kb on + strand, within ABIE53_000726 at 780.081 kb on - strand, within ABIE53_000726 at 780.081 kb on - strand, within ABIE53_000726 at 780.433 kb on + strand at 780.433 kb on + strand at 780.433 kb on + strand at 780.434 kb on - strand at 780.467 kb on + strand at 780.467 kb on + strand at 780.467 kb on + strand at 780.467 kb on + strand at 780.467 kb on + strand at 780.468 kb on - strand at 780.468 kb on - strand at 780.476 kb on - strand at 780.476 kb on - strand at 780.641 kb on + strand, within ABIE53_000727 at 780.641 kb on + strand, within ABIE53_000727 at 780.641 kb on + strand, within ABIE53_000727 at 780.642 kb on - strand, within ABIE53_000727 at 780.642 kb on - strand, within ABIE53_000727 at 780.642 kb on - strand, within ABIE53_000727 at 780.802 kb on + strand, within ABIE53_000727 at 780.802 kb on + strand, within ABIE53_000727 at 780.802 kb on + strand, within ABIE53_000727 at 780.802 kb on + strand, within ABIE53_000727 at 780.803 kb on - strand, within ABIE53_000727 at 780.803 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.842 kb on - strand, within ABIE53_000727 at 780.883 kb on + strand, within ABIE53_000727 at 780.884 kb on - strand, within ABIE53_000727 at 780.884 kb on - strand, within ABIE53_000727 at 780.908 kb on + strand, within ABIE53_000727 at 780.908 kb on + strand, within ABIE53_000727 at 780.909 kb on - strand, within ABIE53_000727 at 780.913 kb on + strand, within ABIE53_000727 at 780.914 kb on - strand, within ABIE53_000727 at 780.914 kb on - strand, within ABIE53_000727 at 780.914 kb on - strand, within ABIE53_000727 at 780.914 kb on - strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.114 kb on + strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.115 kb on - strand, within ABIE53_000727 at 781.165 kb on + strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.166 kb on - strand, within ABIE53_000727 at 781.200 kb on + strand, within ABIE53_000727 at 781.200 kb on + strand, within ABIE53_000727 at 781.201 kb on - strand, within ABIE53_000727 at 781.355 kb on + strand at 781.355 kb on + strand at 781.355 kb on + strand at 781.355 kb on + strand at 781.355 kb on + strand at 781.356 kb on - strand at 781.368 kb on + strand at 781.379 kb on + strand at 781.380 kb on - strand at 781.380 kb on - strand at 781.404 kb on - strand at 781.404 kb on - strand at 781.404 kb on - strand at 781.404 kb on - strand at 781.404 kb on - strand at 781.425 kb on + strand at 781.442 kb on - strand at 781.442 kb on - strand at 781.442 kb on - strand at 781.442 kb on - strand at 781.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 778,893 - ABIE53_000724 0.88 +0.3 778,893 - ABIE53_000724 0.88 +0.3 778,912 - ABIE53_000724 0.89 -1.0 778,912 - ABIE53_000724 0.89 +2.7 778,957 + -1.0 779,134 + -1.2 779,192 + -2.9 779,193 - -1.6 779,193 - -1.1 779,257 + +0.8 779,257 + +0.4 779,258 - -2.4 779,383 + ABIE53_000725 0.30 -1.4 779,383 + ABIE53_000725 0.30 +0.3 779,384 - ABIE53_000725 0.30 -1.1 779,384 - ABIE53_000725 0.30 -1.2 779,384 - ABIE53_000725 0.30 +0.2 779,384 - ABIE53_000725 0.30 +2.3 779,384 - ABIE53_000725 0.30 -0.0 779,384 - ABIE53_000725 0.30 +2.4 779,384 - ABIE53_000725 0.30 -1.3 779,385 + ABIE53_000725 0.30 -1.4 779,385 + ABIE53_000725 0.30 +2.3 779,386 - ABIE53_000725 0.30 -0.4 779,386 - ABIE53_000725 0.30 -1.1 779,386 - ABIE53_000725 0.30 +1.1 779,386 - ABIE53_000725 0.30 +0.4 779,386 - ABIE53_000725 0.30 -0.9 779,386 - ABIE53_000725 0.30 -0.3 779,386 - ABIE53_000725 0.30 +1.1 779,388 - ABIE53_000725 0.31 -1.4 779,404 + ABIE53_000725 0.33 -0.3 779,404 + ABIE53_000725 0.33 +0.9 779,404 + ABIE53_000725 0.33 -0.9 779,404 + ABIE53_000725 0.33 -0.5 779,404 + ABIE53_000725 0.33 +0.8 779,405 - ABIE53_000725 0.34 -0.6 779,455 + ABIE53_000725 0.42 -0.8 779,455 + ABIE53_000725 0.42 -0.7 779,456 - ABIE53_000725 0.43 -0.4 779,506 + ABIE53_000725 0.51 -1.2 779,507 - ABIE53_000725 0.51 -0.6 779,507 - ABIE53_000725 0.51 -1.2 779,528 - ABIE53_000725 0.55 -2.7 779,528 - ABIE53_000725 0.55 -0.2 779,752 + -1.2 779,752 + -0.9 779,752 + +0.3 779,753 - +0.2 779,754 + -1.3 779,754 + +2.4 779,754 + +1.7 779,755 - -1.5 779,831 + -1.1 779,831 + -0.3 779,832 - +3.4 779,832 - -0.5 779,835 + -2.0 779,835 + +0.6 779,835 + -0.9 779,835 + +0.9 779,835 + -1.1 779,836 - +0.9 779,836 - +0.3 779,836 - +1.4 780,080 + ABIE53_000726 0.38 -1.6 780,081 - ABIE53_000726 0.38 -0.9 780,081 - ABIE53_000726 0.38 -1.4 780,433 + -0.3 780,433 + -0.5 780,433 + +0.1 780,434 - -1.2 780,467 + -0.4 780,467 + -1.9 780,467 + -2.5 780,467 + +3.4 780,467 + +1.3 780,468 - +0.1 780,468 - -1.0 780,476 - +0.2 780,476 - -0.9 780,641 + ABIE53_000727 0.12 -0.8 780,641 + ABIE53_000727 0.12 +1.4 780,641 + ABIE53_000727 0.12 -1.8 780,642 - ABIE53_000727 0.12 -2.2 780,642 - ABIE53_000727 0.12 -1.4 780,642 - ABIE53_000727 0.12 -0.9 780,802 + ABIE53_000727 0.31 +2.0 780,802 + ABIE53_000727 0.31 -0.3 780,802 + ABIE53_000727 0.31 -1.2 780,802 + ABIE53_000727 0.31 +1.1 780,803 - ABIE53_000727 0.31 +0.5 780,803 - ABIE53_000727 0.31 +0.1 780,842 - ABIE53_000727 0.36 +0.4 780,842 - ABIE53_000727 0.36 +1.0 780,842 - ABIE53_000727 0.36 -0.2 780,842 - ABIE53_000727 0.36 +0.4 780,842 - ABIE53_000727 0.36 -0.7 780,883 + ABIE53_000727 0.40 -1.2 780,884 - ABIE53_000727 0.41 +0.6 780,884 - ABIE53_000727 0.41 +0.1 780,908 + ABIE53_000727 0.43 -0.1 780,908 + ABIE53_000727 0.43 +1.9 780,909 - ABIE53_000727 0.44 +0.0 780,913 + ABIE53_000727 0.44 -1.3 780,914 - ABIE53_000727 0.44 -0.3 780,914 - ABIE53_000727 0.44 -1.6 780,914 - ABIE53_000727 0.44 -0.5 780,914 - ABIE53_000727 0.44 -1.2 781,114 + ABIE53_000727 0.68 -0.4 781,114 + ABIE53_000727 0.68 -0.6 781,114 + ABIE53_000727 0.68 -0.6 781,114 + ABIE53_000727 0.68 +0.4 781,114 + ABIE53_000727 0.68 +0.4 781,114 + ABIE53_000727 0.68 +0.7 781,114 + ABIE53_000727 0.68 -1.3 781,115 - ABIE53_000727 0.68 +1.6 781,115 - ABIE53_000727 0.68 +1.4 781,115 - ABIE53_000727 0.68 +0.6 781,115 - ABIE53_000727 0.68 -2.3 781,115 - ABIE53_000727 0.68 -1.5 781,165 + ABIE53_000727 0.74 -0.1 781,166 - ABIE53_000727 0.74 -0.2 781,166 - ABIE53_000727 0.74 +1.1 781,166 - ABIE53_000727 0.74 -0.6 781,166 - ABIE53_000727 0.74 -1.1 781,166 - ABIE53_000727 0.74 -0.3 781,166 - ABIE53_000727 0.74 -1.0 781,166 - ABIE53_000727 0.74 -1.3 781,166 - ABIE53_000727 0.74 +0.4 781,200 + ABIE53_000727 0.78 -0.4 781,200 + ABIE53_000727 0.78 -0.0 781,201 - ABIE53_000727 0.78 +0.1 781,355 + -0.5 781,355 + -0.1 781,355 + +0.9 781,355 + +0.7 781,355 + +0.9 781,356 - -0.4 781,368 + +0.9 781,379 + +2.2 781,380 - +0.3 781,380 - +2.1 781,404 - +1.0 781,404 - +2.4 781,404 - -1.4 781,404 - -0.2 781,404 - -0.9 781,425 + -0.7 781,442 - -0.7 781,442 - -0.4 781,442 - -2.3 781,442 - -0.6 781,442 - -1.5
Or see this region's nucleotide sequence