Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000667 and ABIE53_000668 are separated by 140 nucleotides ABIE53_000668 and ABIE53_000669 overlap by 28 nucleotides ABIE53_000669 and ABIE53_000670 are separated by 18 nucleotides ABIE53_000670 and ABIE53_000671 are separated by 204 nucleotides
ABIE53_000667: ABIE53_000667 - glycerol-3-phosphate dehydrogenase (NAD(P)+), at 724,764 to 725,762
_000667
ABIE53_000668: ABIE53_000668 - O-acetyl-ADP-ribose deacetylase (regulator of RNase III), at 725,903 to 726,451
_000668
ABIE53_000669: ABIE53_000669 - tRNA (cytidine/uridine-2'-O-)-methyltransferase, at 726,424 to 726,894
_000669
ABIE53_000670: ABIE53_000670 - ComF family protein, at 726,913 to 727,614
_000670
ABIE53_000671: ABIE53_000671 - malonyl-CoA O-methyltransferase, at 727,819 to 728,748
_000671
Position (kb) 726
727 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 725.760 kb on + strand at 725.761 kb on - strand at 725.761 kb on - strand at 725.761 kb on - strand at 725.770 kb on + strand at 725.770 kb on + strand at 725.771 kb on - strand at 725.771 kb on - strand at 725.771 kb on - strand at 725.771 kb on - strand at 725.771 kb on - strand at 725.832 kb on + strand at 725.832 kb on + strand at 725.832 kb on + strand at 725.832 kb on + strand at 725.833 kb on - strand at 725.875 kb on - strand at 725.911 kb on + strand at 725.911 kb on + strand at 725.912 kb on - strand at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.989 kb on + strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 725.990 kb on - strand, within ABIE53_000668 at 726.131 kb on + strand, within ABIE53_000668 at 726.131 kb on + strand, within ABIE53_000668 at 726.131 kb on + strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.132 kb on - strand, within ABIE53_000668 at 726.157 kb on - strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.203 kb on + strand, within ABIE53_000668 at 726.204 kb on - strand, within ABIE53_000668 at 726.204 kb on - strand, within ABIE53_000668 at 726.204 kb on - strand, within ABIE53_000668 at 726.278 kb on + strand, within ABIE53_000668 at 726.279 kb on - strand, within ABIE53_000668 at 726.279 kb on - strand, within ABIE53_000668 at 726.279 kb on - strand, within ABIE53_000668 at 726.279 kb on - strand, within ABIE53_000668 at 726.324 kb on + strand, within ABIE53_000668 at 726.469 kb on + strand at 726.469 kb on + strand at 726.469 kb on + strand at 726.469 kb on + strand at 726.469 kb on + strand at 726.470 kb on - strand at 726.470 kb on - strand at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.483 kb on + strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.484 kb on - strand, within ABIE53_000669 at 726.486 kb on + strand, within ABIE53_000669 at 726.486 kb on + strand, within ABIE53_000669 at 726.486 kb on + strand, within ABIE53_000669 at 726.487 kb on - strand, within ABIE53_000669 at 726.487 kb on - strand, within ABIE53_000669 at 726.734 kb on + strand, within ABIE53_000669 at 726.743 kb on + strand, within ABIE53_000669 at 726.743 kb on + strand, within ABIE53_000669 at 726.743 kb on + strand, within ABIE53_000669 at 726.744 kb on - strand, within ABIE53_000669 at 726.744 kb on - strand, within ABIE53_000669 at 726.744 kb on - strand, within ABIE53_000669 at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.894 kb on + strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.895 kb on - strand at 726.907 kb on + strand at 726.907 kb on + strand at 726.907 kb on + strand at 726.907 kb on + strand at 726.907 kb on + strand at 726.908 kb on - strand at 726.908 kb on - strand at 726.914 kb on + strand at 726.914 kb on + strand at 726.914 kb on + strand at 726.915 kb on - strand at 726.915 kb on - strand at 726.915 kb on - strand at 726.915 kb on - strand at 726.915 kb on - strand at 727.084 kb on - strand, within ABIE53_000670 at 727.209 kb on + strand, within ABIE53_000670 at 727.210 kb on - strand, within ABIE53_000670 at 727.210 kb on - strand, within ABIE53_000670 at 727.211 kb on + strand, within ABIE53_000670 at 727.211 kb on + strand, within ABIE53_000670 at 727.211 kb on + strand, within ABIE53_000670 at 727.211 kb on + strand, within ABIE53_000670 at 727.211 kb on + strand, within ABIE53_000670 at 727.212 kb on - strand, within ABIE53_000670 at 727.212 kb on - strand, within ABIE53_000670 at 727.391 kb on + strand, within ABIE53_000670 at 727.392 kb on - strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.454 kb on + strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.455 kb on - strand, within ABIE53_000670 at 727.475 kb on + strand, within ABIE53_000670 at 727.475 kb on + strand, within ABIE53_000670 at 727.475 kb on + strand, within ABIE53_000670 at 727.475 kb on + strand, within ABIE53_000670 at 727.476 kb on - strand, within ABIE53_000670 at 727.476 kb on - strand, within ABIE53_000670 at 727.476 kb on - strand, within ABIE53_000670 at 727.532 kb on + strand, within ABIE53_000670 at 727.532 kb on + strand, within ABIE53_000670 at 727.533 kb on - strand, within ABIE53_000670 at 727.533 kb on - strand, within ABIE53_000670 at 727.563 kb on + strand at 727.597 kb on - strand at 727.603 kb on + strand at 727.603 kb on + strand at 727.750 kb on + strand at 727.752 kb on + strand at 727.752 kb on + strand at 727.752 kb on + strand at 727.752 kb on + strand at 727.752 kb on + strand at 727.752 kb on + strand at 727.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 725,760 + +2.5 725,761 - -0.6 725,761 - +0.4 725,761 - -0.2 725,770 + +1.4 725,770 + -0.8 725,771 - +1.4 725,771 - +1.6 725,771 - -0.3 725,771 - +0.6 725,771 - -0.4 725,832 + -1.1 725,832 + -1.3 725,832 + -1.2 725,832 + -1.1 725,833 - -0.9 725,875 - -0.4 725,911 + +0.0 725,911 + +1.1 725,912 - +0.4 725,989 + ABIE53_000668 0.16 +2.0 725,989 + ABIE53_000668 0.16 -1.8 725,989 + ABIE53_000668 0.16 +1.4 725,989 + ABIE53_000668 0.16 +2.2 725,989 + ABIE53_000668 0.16 +0.6 725,989 + ABIE53_000668 0.16 -0.9 725,990 - ABIE53_000668 0.16 -1.3 725,990 - ABIE53_000668 0.16 -2.0 725,990 - ABIE53_000668 0.16 +0.8 725,990 - ABIE53_000668 0.16 -1.0 725,990 - ABIE53_000668 0.16 +0.2 725,990 - ABIE53_000668 0.16 +0.4 725,990 - ABIE53_000668 0.16 +0.6 726,131 + ABIE53_000668 0.42 -1.3 726,131 + ABIE53_000668 0.42 -1.9 726,131 + ABIE53_000668 0.42 -0.0 726,132 - ABIE53_000668 0.42 -1.4 726,132 - ABIE53_000668 0.42 -1.6 726,132 - ABIE53_000668 0.42 -0.4 726,132 - ABIE53_000668 0.42 -0.5 726,132 - ABIE53_000668 0.42 +0.6 726,132 - ABIE53_000668 0.42 -0.8 726,132 - ABIE53_000668 0.42 -1.4 726,132 - ABIE53_000668 0.42 +0.8 726,157 - ABIE53_000668 0.46 +2.2 726,203 + ABIE53_000668 0.55 -1.3 726,203 + ABIE53_000668 0.55 -0.5 726,203 + ABIE53_000668 0.55 -2.4 726,203 + ABIE53_000668 0.55 -0.2 726,203 + ABIE53_000668 0.55 -0.8 726,204 - ABIE53_000668 0.55 +0.1 726,204 - ABIE53_000668 0.55 +0.6 726,204 - ABIE53_000668 0.55 +1.4 726,278 + ABIE53_000668 0.68 +0.5 726,279 - ABIE53_000668 0.68 +0.6 726,279 - ABIE53_000668 0.68 -0.6 726,279 - ABIE53_000668 0.68 -1.4 726,279 - ABIE53_000668 0.68 -0.0 726,324 + ABIE53_000668 0.77 +0.7 726,469 + +0.2 726,469 + +1.8 726,469 + +1.1 726,469 + -0.5 726,469 + -0.8 726,470 - -0.3 726,470 - -1.5 726,483 + ABIE53_000669 0.13 +1.8 726,483 + ABIE53_000669 0.13 +1.1 726,483 + ABIE53_000669 0.13 +0.8 726,483 + ABIE53_000669 0.13 -0.0 726,483 + ABIE53_000669 0.13 -0.5 726,483 + ABIE53_000669 0.13 -1.6 726,483 + ABIE53_000669 0.13 +0.4 726,483 + ABIE53_000669 0.13 -0.4 726,483 + ABIE53_000669 0.13 -0.9 726,483 + ABIE53_000669 0.13 +0.5 726,483 + ABIE53_000669 0.13 -0.4 726,483 + ABIE53_000669 0.13 +1.7 726,484 - ABIE53_000669 0.13 -0.5 726,484 - ABIE53_000669 0.13 +1.2 726,484 - ABIE53_000669 0.13 +0.7 726,484 - ABIE53_000669 0.13 +0.8 726,484 - ABIE53_000669 0.13 +2.6 726,484 - ABIE53_000669 0.13 +1.3 726,484 - ABIE53_000669 0.13 +2.0 726,484 - ABIE53_000669 0.13 +1.1 726,484 - ABIE53_000669 0.13 +0.4 726,486 + ABIE53_000669 0.13 +2.4 726,486 + ABIE53_000669 0.13 +0.6 726,486 + ABIE53_000669 0.13 -0.7 726,487 - ABIE53_000669 0.13 +0.8 726,487 - ABIE53_000669 0.13 +2.5 726,734 + ABIE53_000669 0.66 -0.9 726,743 + ABIE53_000669 0.68 -1.7 726,743 + ABIE53_000669 0.68 -0.2 726,743 + ABIE53_000669 0.68 -0.3 726,744 - ABIE53_000669 0.68 +1.8 726,744 - ABIE53_000669 0.68 +0.1 726,744 - ABIE53_000669 0.68 +0.2 726,894 + -1.5 726,894 + +0.3 726,894 + -0.2 726,894 + +0.8 726,894 + +0.8 726,894 + +0.7 726,894 + -1.6 726,894 + +0.8 726,894 + -0.9 726,894 + -0.3 726,894 + +0.6 726,894 + -1.0 726,894 + +2.7 726,894 + -0.8 726,894 + -1.4 726,894 + +0.6 726,894 + -0.3 726,894 + -0.8 726,894 + -0.4 726,894 + +0.4 726,894 + -0.5 726,895 - +2.3 726,895 - -0.4 726,895 - -0.4 726,895 - -0.5 726,895 - +0.2 726,895 - +0.0 726,895 - -0.4 726,895 - +1.1 726,895 - +2.4 726,895 - -1.5 726,895 - -0.9 726,895 - +1.4 726,895 - +2.6 726,895 - -0.8 726,895 - +0.1 726,895 - -1.3 726,895 - +1.0 726,907 + -1.1 726,907 + -0.0 726,907 + +0.5 726,907 + +0.2 726,907 + +0.8 726,908 - -0.9 726,908 - -0.5 726,914 + -1.2 726,914 + +1.6 726,914 + -0.9 726,915 - -0.1 726,915 - +1.4 726,915 - +0.4 726,915 - -0.1 726,915 - -1.0 727,084 - ABIE53_000670 0.24 -1.1 727,209 + ABIE53_000670 0.42 -1.8 727,210 - ABIE53_000670 0.42 -2.0 727,210 - ABIE53_000670 0.42 +0.8 727,211 + ABIE53_000670 0.42 +2.7 727,211 + ABIE53_000670 0.42 -0.1 727,211 + ABIE53_000670 0.42 +0.4 727,211 + ABIE53_000670 0.42 -0.8 727,211 + ABIE53_000670 0.42 -0.4 727,212 - ABIE53_000670 0.43 -0.8 727,212 - ABIE53_000670 0.43 -1.2 727,391 + ABIE53_000670 0.68 -1.4 727,392 - ABIE53_000670 0.68 +0.8 727,454 + ABIE53_000670 0.77 +0.8 727,454 + ABIE53_000670 0.77 +0.4 727,454 + ABIE53_000670 0.77 -1.1 727,454 + ABIE53_000670 0.77 -0.8 727,454 + ABIE53_000670 0.77 +1.0 727,454 + ABIE53_000670 0.77 -0.6 727,454 + ABIE53_000670 0.77 -0.4 727,454 + ABIE53_000670 0.77 -0.2 727,454 + ABIE53_000670 0.77 -0.2 727,454 + ABIE53_000670 0.77 +1.5 727,454 + ABIE53_000670 0.77 +3.4 727,454 + ABIE53_000670 0.77 +0.5 727,454 + ABIE53_000670 0.77 +1.9 727,454 + ABIE53_000670 0.77 +2.0 727,454 + ABIE53_000670 0.77 -2.2 727,454 + ABIE53_000670 0.77 -2.1 727,454 + ABIE53_000670 0.77 -0.2 727,454 + ABIE53_000670 0.77 +0.2 727,454 + ABIE53_000670 0.77 -0.5 727,454 + ABIE53_000670 0.77 +0.6 727,454 + ABIE53_000670 0.77 -0.5 727,454 + ABIE53_000670 0.77 +1.5 727,455 - ABIE53_000670 0.77 -1.4 727,455 - ABIE53_000670 0.77 -1.3 727,455 - ABIE53_000670 0.77 +0.0 727,455 - ABIE53_000670 0.77 -0.7 727,455 - ABIE53_000670 0.77 +1.2 727,455 - ABIE53_000670 0.77 -1.4 727,455 - ABIE53_000670 0.77 -0.3 727,455 - ABIE53_000670 0.77 +1.4 727,455 - ABIE53_000670 0.77 -1.0 727,455 - ABIE53_000670 0.77 +0.4 727,455 - ABIE53_000670 0.77 +0.7 727,455 - ABIE53_000670 0.77 -0.1 727,455 - ABIE53_000670 0.77 +0.2 727,455 - ABIE53_000670 0.77 +0.5 727,475 + ABIE53_000670 0.80 +0.5 727,475 + ABIE53_000670 0.80 -0.2 727,475 + ABIE53_000670 0.80 -0.4 727,475 + ABIE53_000670 0.80 +0.0 727,476 - ABIE53_000670 0.80 -1.3 727,476 - ABIE53_000670 0.80 -0.6 727,476 - ABIE53_000670 0.80 -0.5 727,532 + ABIE53_000670 0.88 -0.4 727,532 + ABIE53_000670 0.88 -1.2 727,533 - ABIE53_000670 0.88 +0.1 727,533 - ABIE53_000670 0.88 +1.7 727,563 + -0.7 727,597 - +1.4 727,603 + -1.0 727,603 + -0.2 727,750 + -1.5 727,752 + -1.0 727,752 + -1.4 727,752 + -0.2 727,752 + -1.3 727,752 + +0.5 727,752 + -0.7 727,752 + -0.5
Or see this region's nucleotide sequence