Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000370

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000369 and ABIE53_000370 are separated by 130 nucleotidesABIE53_000370 and ABIE53_000371 are separated by 150 nucleotides ABIE53_000369: ABIE53_000369 - methionine aminotransferase, at 397,722 to 398,876 _000369 ABIE53_000370: ABIE53_000370 - lysine/arginine/ornithine transport system substrate-binding protein, at 399,007 to 399,801 _000370 ABIE53_000371: ABIE53_000371 - AraC-like DNA-binding protein, at 399,952 to 400,797 _000371 Position (kb) 399 400Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 398.031 kb on + strand, within ABIE53_000369at 398.100 kb on + strand, within ABIE53_000369at 398.100 kb on + strand, within ABIE53_000369at 398.100 kb on + strand, within ABIE53_000369at 398.100 kb on + strand, within ABIE53_000369at 398.100 kb on + strand, within ABIE53_000369at 398.100 kb on + strand, within ABIE53_000369at 398.101 kb on - strand, within ABIE53_000369at 398.101 kb on - strand, within ABIE53_000369at 398.101 kb on - strand, within ABIE53_000369at 398.101 kb on - strand, within ABIE53_000369at 398.101 kb on - strand, within ABIE53_000369at 398.101 kb on - strand, within ABIE53_000369at 398.331 kb on + strand, within ABIE53_000369at 398.332 kb on - strand, within ABIE53_000369at 398.399 kb on + strand, within ABIE53_000369at 398.400 kb on - strand, within ABIE53_000369at 398.529 kb on - strand, within ABIE53_000369at 398.541 kb on + strand, within ABIE53_000369at 398.542 kb on - strand, within ABIE53_000369at 398.577 kb on + strand, within ABIE53_000369at 398.577 kb on + strand, within ABIE53_000369at 398.598 kb on + strand, within ABIE53_000369at 398.598 kb on + strand, within ABIE53_000369at 398.598 kb on + strand, within ABIE53_000369at 398.598 kb on + strand, within ABIE53_000369at 398.599 kb on - strand, within ABIE53_000369at 398.599 kb on - strand, within ABIE53_000369at 398.781 kb on + strandat 398.782 kb on - strandat 398.782 kb on - strandat 398.872 kb on + strandat 398.920 kb on + strandat 398.920 kb on + strandat 398.920 kb on + strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.941 kb on + strandat 398.941 kb on + strandat 398.941 kb on + strandat 398.941 kb on + strandat 398.941 kb on + strandat 398.942 kb on - strandat 398.952 kb on + strandat 398.952 kb on + strandat 398.952 kb on + strandat 398.953 kb on - strandat 398.962 kb on + strandat 398.962 kb on + strandat 398.962 kb on + strandat 398.963 kb on - strandat 398.963 kb on - strandat 398.963 kb on - strandat 398.965 kb on + strandat 398.966 kb on - strandat 398.966 kb on - strandat 398.974 kb on + strandat 398.974 kb on + strandat 398.974 kb on + strandat 398.974 kb on + strandat 398.975 kb on - strandat 398.977 kb on + strandat 398.977 kb on + strandat 399.500 kb on - strand, within ABIE53_000370at 399.520 kb on + strand, within ABIE53_000370at 399.520 kb on + strand, within ABIE53_000370at 399.521 kb on - strand, within ABIE53_000370at 399.521 kb on - strand, within ABIE53_000370at 399.521 kb on - strand, within ABIE53_000370at 399.521 kb on - strand, within ABIE53_000370at 399.613 kb on + strand, within ABIE53_000370at 399.613 kb on + strand, within ABIE53_000370at 399.614 kb on - strand, within ABIE53_000370at 399.670 kb on + strand, within ABIE53_000370at 399.671 kb on - strand, within ABIE53_000370at 399.769 kb on + strandat 399.769 kb on + strandat 399.769 kb on + strandat 399.770 kb on - strandat 399.770 kb on - strandat 399.780 kb on + strandat 399.781 kb on - strandat 399.800 kb on - strandat 399.800 kb on - strandat 399.800 kb on - strandat 399.800 kb on - strandat 399.836 kb on + strandat 399.836 kb on + strandat 399.837 kb on - strandat 399.837 kb on - strandat 399.837 kb on - strandat 399.837 kb on - strandat 399.873 kb on + strandat 399.873 kb on + strandat 399.873 kb on + strandat 399.873 kb on + strandat 399.873 kb on + strandat 399.874 kb on - strandat 399.874 kb on - strandat 399.874 kb on - strandat 399.874 kb on - strandat 399.874 kb on - strandat 399.931 kb on + strandat 399.931 kb on + strandat 399.931 kb on + strandat 399.932 kb on - strandat 400.072 kb on + strand, within ABIE53_000371at 400.132 kb on + strand, within ABIE53_000371at 400.132 kb on + strand, within ABIE53_000371at 400.132 kb on + strand, within ABIE53_000371at 400.132 kb on + strand, within ABIE53_000371at 400.132 kb on + strand, within ABIE53_000371at 400.133 kb on - strand, within ABIE53_000371at 400.133 kb on - strand, within ABIE53_000371at 400.133 kb on - strand, within ABIE53_000371at 400.133 kb on - strand, within ABIE53_000371at 400.133 kb on - strand, within ABIE53_000371at 400.133 kb on - strand, within ABIE53_000371at 400.133 kb on - strand, within ABIE53_000371at 400.306 kb on + strand, within ABIE53_000371at 400.307 kb on - strand, within ABIE53_000371at 400.307 kb on - strand, within ABIE53_000371at 400.307 kb on - strand, within ABIE53_000371at 400.307 kb on - strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.562 kb on + strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.563 kb on - strand, within ABIE53_000371at 400.639 kb on + strand, within ABIE53_000371at 400.639 kb on + strand, within ABIE53_000371at 400.639 kb on + strand, within ABIE53_000371at 400.639 kb on + strand, within ABIE53_000371at 400.639 kb on + strand, within ABIE53_000371at 400.639 kb on + strand, within ABIE53_000371at 400.640 kb on - strand, within ABIE53_000371at 400.663 kb on + strand, within ABIE53_000371at 400.664 kb on - strand, within ABIE53_000371at 400.664 kb on - strand, within ABIE53_000371

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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398,031 + ABIE53_000369 0.27 +0.5
398,100 + ABIE53_000369 0.33 -1.3
398,100 + ABIE53_000369 0.33 -0.0
398,100 + ABIE53_000369 0.33 -0.2
398,100 + ABIE53_000369 0.33 -1.5
398,100 + ABIE53_000369 0.33 -1.4
398,100 + ABIE53_000369 0.33 -1.3
398,101 - ABIE53_000369 0.33 +0.2
398,101 - ABIE53_000369 0.33 -0.7
398,101 - ABIE53_000369 0.33 -0.9
398,101 - ABIE53_000369 0.33 -0.7
398,101 - ABIE53_000369 0.33 -0.4
398,101 - ABIE53_000369 0.33 +2.6
398,331 + ABIE53_000369 0.53 +0.8
398,332 - ABIE53_000369 0.53 -0.2
398,399 + ABIE53_000369 0.59 -1.9
398,400 - ABIE53_000369 0.59 -0.2
398,529 - ABIE53_000369 0.70 -0.2
398,541 + ABIE53_000369 0.71 -0.5
398,542 - ABIE53_000369 0.71 +0.8
398,577 + ABIE53_000369 0.74 +0.7
398,577 + ABIE53_000369 0.74 +0.7
398,598 + ABIE53_000369 0.76 +0.3
398,598 + ABIE53_000369 0.76 -1.4
398,598 + ABIE53_000369 0.76 +0.4
398,598 + ABIE53_000369 0.76 -0.9
398,599 - ABIE53_000369 0.76 -0.9
398,599 - ABIE53_000369 0.76 -1.3
398,781 + -1.2
398,782 - -0.8
398,782 - -0.4
398,872 + +0.4
398,920 + +1.2
398,920 + -0.1
398,920 + +0.2
398,921 - -1.5
398,921 - +1.6
398,921 - +0.4
398,941 + -0.8
398,941 + -1.0
398,941 + -1.1
398,941 + +0.2
398,941 + -0.3
398,942 - +0.0
398,952 + +0.4
398,952 + +0.6
398,952 + +1.1
398,953 - -1.3
398,962 + +1.4
398,962 + -0.8
398,962 + -0.4
398,963 - +0.1
398,963 - -0.2
398,963 - -0.9
398,965 + -1.6
398,966 - -1.0
398,966 - -0.0
398,974 + +2.0
398,974 + -0.4
398,974 + -0.7
398,974 + +0.6
398,975 - -0.0
398,977 + -0.1
398,977 + -1.2
399,500 - ABIE53_000370 0.62 +1.8
399,520 + ABIE53_000370 0.65 -0.8
399,520 + ABIE53_000370 0.65 -0.0
399,521 - ABIE53_000370 0.65 +1.2
399,521 - ABIE53_000370 0.65 -0.4
399,521 - ABIE53_000370 0.65 -0.3
399,521 - ABIE53_000370 0.65 +0.0
399,613 + ABIE53_000370 0.76 -0.8
399,613 + ABIE53_000370 0.76 +0.6
399,614 - ABIE53_000370 0.76 -0.7
399,670 + ABIE53_000370 0.83 -0.6
399,671 - ABIE53_000370 0.84 -1.7
399,769 + +2.4
399,769 + -0.9
399,769 + -1.0
399,770 - +0.6
399,770 - +0.1
399,780 + +0.8
399,781 - +0.2
399,800 - -1.3
399,800 - -0.0
399,800 - -0.3
399,800 - +3.4
399,836 + +0.2
399,836 + +0.4
399,837 - -1.5
399,837 - -0.4
399,837 - +0.2
399,837 - +0.2
399,873 + -0.2
399,873 + +2.7
399,873 + +0.0
399,873 + -0.9
399,873 + +0.8
399,874 - +0.2
399,874 - +0.8
399,874 - -0.4
399,874 - +1.1
399,874 - +1.8
399,931 + -1.5
399,931 + +1.4
399,931 + -0.8
399,932 - +0.1
400,072 + ABIE53_000371 0.14 -0.9
400,132 + ABIE53_000371 0.21 +2.4
400,132 + ABIE53_000371 0.21 -0.5
400,132 + ABIE53_000371 0.21 -0.8
400,132 + ABIE53_000371 0.21 +0.9
400,132 + ABIE53_000371 0.21 +0.6
400,133 - ABIE53_000371 0.21 -0.6
400,133 - ABIE53_000371 0.21 +0.9
400,133 - ABIE53_000371 0.21 +2.4
400,133 - ABIE53_000371 0.21 +1.1
400,133 - ABIE53_000371 0.21 -2.0
400,133 - ABIE53_000371 0.21 +1.9
400,133 - ABIE53_000371 0.21 -0.8
400,306 + ABIE53_000371 0.42 -1.5
400,307 - ABIE53_000371 0.42 +0.8
400,307 - ABIE53_000371 0.42 -3.0
400,307 - ABIE53_000371 0.42 +0.8
400,307 - ABIE53_000371 0.42 +1.4
400,562 + ABIE53_000371 0.72 +0.8
400,562 + ABIE53_000371 0.72 -0.2
400,562 + ABIE53_000371 0.72 -1.0
400,562 + ABIE53_000371 0.72 -0.3
400,562 + ABIE53_000371 0.72 -0.8
400,562 + ABIE53_000371 0.72 +1.8
400,562 + ABIE53_000371 0.72 +0.2
400,562 + ABIE53_000371 0.72 -1.5
400,562 + ABIE53_000371 0.72 -0.6
400,562 + ABIE53_000371 0.72 -0.5
400,562 + ABIE53_000371 0.72 -1.1
400,562 + ABIE53_000371 0.72 -0.2
400,562 + ABIE53_000371 0.72 +2.8
400,562 + ABIE53_000371 0.72 -0.2
400,562 + ABIE53_000371 0.72 +0.7
400,562 + ABIE53_000371 0.72 -0.1
400,562 + ABIE53_000371 0.72 +0.0
400,562 + ABIE53_000371 0.72 +1.8
400,562 + ABIE53_000371 0.72 -0.9
400,563 - ABIE53_000371 0.72 +0.1
400,563 - ABIE53_000371 0.72 +1.2
400,563 - ABIE53_000371 0.72 +2.6
400,563 - ABIE53_000371 0.72 -0.5
400,563 - ABIE53_000371 0.72 -1.4
400,563 - ABIE53_000371 0.72 +0.4
400,563 - ABIE53_000371 0.72 -1.2
400,563 - ABIE53_000371 0.72 +1.9
400,563 - ABIE53_000371 0.72 +1.6
400,563 - ABIE53_000371 0.72 -1.0
400,563 - ABIE53_000371 0.72 +1.4
400,563 - ABIE53_000371 0.72 -0.8
400,563 - ABIE53_000371 0.72 -1.5
400,563 - ABIE53_000371 0.72 -0.2
400,563 - ABIE53_000371 0.72 -0.8
400,563 - ABIE53_000371 0.72 +2.6
400,639 + ABIE53_000371 0.81 +0.1
400,639 + ABIE53_000371 0.81 -0.4
400,639 + ABIE53_000371 0.81 +1.7
400,639 + ABIE53_000371 0.81 +0.8
400,639 + ABIE53_000371 0.81 -1.0
400,639 + ABIE53_000371 0.81 +0.9
400,640 - ABIE53_000371 0.81 +0.8
400,663 + ABIE53_000371 0.84 -1.1
400,664 - ABIE53_000371 0.84 +2.4
400,664 - ABIE53_000371 0.84 +2.4

Or see this region's nucleotide sequence